Gene Information

Name : GM21_1254 (GM21_1254)
Accession : YP_003021073.1
Strain : Geobacter sp. M21
Genome accession: NC_012918
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1462957 - 1464177 bp
Length : 1221 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: gbm:Gbem_3253 integrase family protein

DNA sequence :
ATGCCATTGACGGATGTAAAGGTGAGAACAGCGAAGCCCGGAGAAAAGCAAGTGAAGCTATCCGATGGTGATGGAATGTA
TCTCCTTGTTACTCCCAACGGCGGGAAGTGTTGGCGGCTCAAATACCGCTTTGGGGGCAAGGAAAAAGTGTTGGCGCTTG
GCACCTATCCCGAAATCTCACTTGTAGACGCACGCCAACGCCGACATGAAGCGAGAAAACTTTTAGCTAACGGTGTTGAC
CCTAACGAGATCAAGAAGGCTCAGAAGGCCGCTACGATTACCGAGACAGAAAATAGCTTTGAAGTAGTGGCGCGGGAATG
GCACCAGAAATTCTCACCTTCTTGGTCAGGGGTTCACTCTGACACGACATTGCGCCGGTTACAAGCTGACGTGTTCCCTG
CAATAGGGGCGCGGCCTATATCGGAGATCAAAGCGCCGGATGCGTTGGCTATGTTGCGGCGGATTGAATCGAGGGGGGCG
CTTGAGACAGCACATCGAATTCGGACCATCTGCGGCCAAGTTTTCCGCTATGCTGTGGCCACTGGTCGCGCCGAGAGGGA
TTGCACTGCTGATCTTAAAGGAGCATTGCCACCCTGTAAAAAAAGCCACCTTGCTGCAATAACGGACCCCAAAGCCGTGG
CACCCTTGCTTCGGGCCATAGATGGGTATCAAGGTACGATTCCGGTGAAATCTGCGTTGCAATTGGCTGCAATGTTTTTC
GTCCGCCCTGGGGAGTTGAGGCAGGCTGAATGGTCAGAGATAGACTTTGAAAATGCGCTATGGAATATTCCCGCCAGTCG
CATGAAAATGAAAGAACCGCACATTGTCCCGTTGGCAAGTCATGCAATTGCAATTCTGAAGGAACTGCAGGCCCTCACCG
GCAGAAGCCGTTTCCTTTTCCCTTCCGGCAGGTCGTTCACCCGTCCTATGTCCAACAATGCCATAAATGCAGCCTTGCGG
CGCATGGGTTTTGACAAGGATGAAATGACCGGACATGGCTTCCGAGCTATGGCGCGTACAATACTCGATGAAGTGTTGCA
ATTCCGTCCTGATTTTATCGAGCATCAACTAGCACATGCCGTTAAAGACCCCAACGGACGCGCCTACAACCGGACGGCGC
ACCTTGCTGAGCGTCGGAAGATGATGCAGACATGGGCGGAGTATTTGGATGATTTAAAAAAAGGCCCGAAGGTTTTACTA
TTTAAGAGAGCGGAAGGATAA

Protein sequence :
MPLTDVKVRTAKPGEKQVKLSDGDGMYLLVTPNGGKCWRLKYRFGGKEKVLALGTYPEISLVDARQRRHEARKLLANGVD
PNEIKKAQKAATITETENSFEVVAREWHQKFSPSWSGVHSDTTLRRLQADVFPAIGARPISEIKAPDALAMLRRIESRGA
LETAHRIRTICGQVFRYAVATGRAERDCTADLKGALPPCKKSHLAAITDPKAVAPLLRAIDGYQGTIPVKSALQLAAMFF
VRPGELRQAEWSEIDFENALWNIPASRMKMKEPHIVPLASHAIAILKELQALTGRSRFLFPSGRSFTRPMSNNAINAALR
RMGFDKDEMTGHGFRAMARTILDEVLQFRPDFIEHQLAHAVKDPNGRAYNRTAHLAERRKMMQTWAEYLDDLKKGPKVLL
FKRAEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs4534 NP_312561.1 integrase Not tested LEE Protein 8e-89 47
int AAC31482.1 CP4-like integrase Not tested LEE Protein 6e-89 47
int ACU09430.1 integrase Not tested LEE Protein 6e-89 47
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 8e-89 47
int AAD44730.1 Int Not tested SHI-2 Protein 3e-89 47
int CAC39282.1 integrase Not tested LPA Protein 1e-89 47
aec33 AAW51716.1 Int Not tested AGI-3 Protein 6e-90 47
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-87 47
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 5e-87 47
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 5e-87 47
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-81 46
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-85 44
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 7e-77 44
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-77 44
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-77 44
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-77 44
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 7e-77 44
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-78 44
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-77 44
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-78 44
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-78 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 5e-78 44
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 5e-78 44
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-77 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-78 43
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-78 43
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-77 43
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-77 43
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-76 43
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-77 43
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-77 43
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-77 43
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-77 43
int AAK00456.1 Int Not tested SHI-1 Protein 6e-70 42
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-71 42
int CAC81896.1 integrase Not tested LEE II Protein 3e-69 42
int2 NP_993013.1 integrase Not tested HPI Protein 1e-66 41
int CAA21384.1 - Not tested HPI Protein 1e-66 41
int CAA08754.1 integrase Not tested HPI Protein 4e-67 41
int YP_002346908.1 integrase Not tested HPI Protein 1e-66 41
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM21_1254 YP_003021073.1 integrase family protein VFG0783 Protein 3e-89 47
GM21_1254 YP_003021073.1 integrase family protein VFG0598 Protein 2e-87 47
GM21_1254 YP_003021073.1 integrase family protein VFG1693 Protein 8e-78 44
GM21_1254 YP_003021073.1 integrase family protein VFG0626 Protein 2e-78 43
GM21_1254 YP_003021073.1 integrase family protein VFG1536 Protein 7e-72 42