Gene Information

Name : PC1_0973 (PC1_0973)
Accession : YP_003016559.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : transport system permease protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 1122171 - 1123166 bp
Length : 996 bp
Strand : -
Note : PFAM: transport system permease protein; KEGG: eca:ECA1075 iron-dicitrate transporter permease subunit

DNA sequence : 
ATGAGGCAAGATTTTCATCCGTTCTGGCGTTGGGGATTGCCGATAGCGGCACTGCTGGGCGTGTTCTGGCTCAGCCTGTT
CTGTTATTCCGCGATCCCCATTCCCGCATTGAGCGCCATCAAGGCGCTGATAACCGGCTCGCCTTCTTCGCTACCCGAGA
CGCTAGTGCTCAACTTGCGTCTGCCACGCAGTCTGGTTGCCATTCTGATCGGCGCCAGCCTGGCACTGTCCGGCGCTCTG
CTCCAGACCCTGACTCATAATCCTCTGGCCTCACCTTCTCTGCTCGGCATTAATAGCGGCGCAGCGTTGGCGATGGCACT
GACCAGCGCCTTCAGTTCTTCACTTTCCGGTTACCCTATCGCCTTTGTTGCCGCTGGCGGTGGCGGCCTGTGCTGGCTGG
TCGTCATGGCTGCTGGCGGCGGCTGGCGACAAACGCTCGACCGTAATCGGCTGATTCTGGCGGGTGTTGCGCTTTCCGCC
CTGTGTATGGCCTTAACGCGGATCACGCTCCTGCTGGCGGAAGATCACGCCTATGGCATTTTTTACTGGCTGGCGGGGGG
CGTATCGCACGCGCGCTGGGTGGAATTCTGGCAACTCTTCCCGTTTGTTATTACCGTCACGCCCGTTGTTCTGTTGATGG
CTAACCAGCTTAATCTGCTGAATATCGGTGATGTCAGCGCCCATACGCTGGGCGTCAACTTAGGTCGGTTGCGCCTCATC
CTCAATCTGGCAGTGCTGCTTTTAGTGGGCGCCTGCGTGAGTGTGGCCGGTCCGGTGGCGTTTATCGGCCTGTTGATACC
GCATCTGGCGCGTTTCTGGATCGGTTACGATCAGAGAAAACTGCTCCCTATGAGCATGTTGATGGGCGCAGCGTTTATGT
TACTGGCCGATCTGCTCGCCCGCGCACTCGCCTGGCCGGGCGAACTGCCAGCCGGCGCAGTACTGGCGCTCATCGGCGCC
CCCTGTTTCGTCTGGCTGGCAAGGAGGCGAGGATAA

Protein sequence : 
MRQDFHPFWRWGLPIAALLGVFWLSLFCYSAIPIPALSAIKALITGSPSSLPETLVLNLRLPRSLVAILIGASLALSGAL
LQTLTHNPLASPSLLGINSGAALAMALTSAFSSSLSGYPIAFVAAGGGGLCWLVVMAAGGGWRQTLDRNRLILAGVALSA
LCMALTRITLLLAEDHAYGIFYWLAGGVSHARWVEFWQLFPFVITVTPVVLLMANQLNLLNIGDVSAHTLGVNLGRLRLI
LNLAVLLLVGACVSVAGPVAFIGLLIPHLARFWIGYDQRKLLPMSMLMGAAFMLLADLLARALAWPGELPAGAVLALIGA
PCFVWLARRRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecC AAL08453.1 FecC Virulence SRL Protein 4e-78 77

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_0973 YP_003016559.1 transport system permease protein VFG1044 Protein 2e-78 77
PC1_0973 YP_003016559.1 transport system permease protein VFG0926 Protein 7e-16 41