Gene Information

Name : PC1_0972 (PC1_0972)
Accession : YP_003016558.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : transport system permease protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 1121212 - 1122171 bp
Length : 960 bp
Strand : -
Note : PFAM: transport system permease protein; KEGG: eca:ECA1074 iron-dicitrate transporter subunit FecD

DNA sequence :

ATGCGCCCCGTTATTGTGTTTATTTCAATCACACTGCTGCTACTGACGATCAGCATTCTGTCGCTGCGCCTGGGAGCCAT
TCCGCTGCCGTGGTCGGCGCTGATGAGCGGCTGGCACAGTGCCAACGAACATCATTATGTGCTGACGCAGTATCGCCTGC
CACGTGTGCTGCTGGCGCTGTTTGTCGGCGCGGCGCTAGCCATTTCCGGCGTGTTGGTGCAAGGCATTGTGCGTAACCCG
CTGGCATCACCGGATATTCTCGGAGTGAACCACGCGGCAAGTCTGACGACCGTTAGCGTACTGATGCTGGTACCTGCACT
GCCGGTGATTTGGCTACCGCTTCTCGCGTTCATCGGCGGCATCGCTGGGCTACTGCTGCTGAGACTGATCGCGGGAGCGT
CATCCCCGATGCGGCTGGCGCTTATCGGCGTCGCGCTGTCCGCCACTTGGGCAAGTGTCACCGATTACCTGATTCTCTCG
CGACCGCAGGATATCAACAACGCGCTGCTGTGGCTGACGGGTAGCCTGTGGGGGCGCGACTGGTCATTCGTCATGGTCGC
GTTGCCTGTACTCTGCATACTGATTCCGCTCAGCCTGCGATTTTGCCGCGATCTGGATCTTCTGGCACTGGGCGACGATC
GCGCCAGTACGCTGGGCGTCAACATCAGGCGCATCCAGTTCTGGGGACTGGCGCTCGCCGTCGCGCTCGCCGCAACCAGC
GTAGCCGTCTGCGGCCCCATCGGCTTTATCAGCCTCGTGGTGCCACATCTCATTCGCTACTTAGTGGGAGGACGGCACCG
CTGGCTCCTCCCAGCTTCTGCTATTGCTGGTGCGCTGGTCCTGCTGCTTGCCGATCTGCTGGCACGCACGATAAACCCGC
CGATGGAATTACCCGCTGGGGTACTTACTGCCATTATCGGCGCCCCTTGGTTTTTTTGGCTTCTTGTGAGAATGCGCTAA

Protein sequence :

MRPVIVFISITLLLLTISILSLRLGAIPLPWSALMSGWHSANEHHYVLTQYRLPRVLLALFVGAALAISGVLVQGIVRNP
LASPDILGVNHAASLTTVSVLMLVPALPVIWLPLLAFIGGIAGLLLLRLIAGASSPMRLALIGVALSATWASVTDYLILS
RPQDINNALLWLTGSLWGRDWSFVMVALPVLCILIPLSLRFCRDLDLLALGDDRASTLGVNIRRIQFWGLALAVALAATS
VAVCGPIGFISLVVPHLIRYLVGGRHRWLLPASAIAGALVLLLADLLARTINPPMELPAGVLTAIIGAPWFFWLLVRMR

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
fecD	AAL08452.1	FecD	Virulence	SRL	Protein	1e-68	71

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PC1_0972	YP_003016558.1	transport system permease protein	BAC0163	Protein	4e-69	71

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PC1_0972	YP_003016558.1	transport system permease protein	VFG1043	Protein	9e-69	71