Gene Information

Name : PC1_0971 (PC1_0971)
Accession : YP_003016557.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1120444 - 1121211 bp
Length : 768 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1073 iron-dicitrate transporter ATP-binding subunit

DNA sequence : 
ATGGAACTGACAACACAAAACCTGACGGCGGGCTATGGCGACAAACGCATTCTTGACGAGCTGTCACTGTCGTTACCCGC
CGGAAAAATTACCGCCCTGCTCGGCCCCAATGGCTGCGGCAAATCAACGCTGTTGAAGTGCTTCGCCAAACTGCTTACCC
CGGAATCCGGCGCGATTGAGCTCAACGGCAAACCACTCTCTGCATTCTCTGCCCGCCAACTCTCGCGTCATCTGGCGCTA
TTGCCGCAGCAGCACTTGACGCCAGAAGGGATCACCGTGCGTGACCTGGTAGCCTACGGGCGTAGCCCCTGGCTATCGCT
ATGGGGACGACTATCACAGGACGATCGCCAGCGCGTACAGCGTGCGATGGAGAAAACGCACATCGTCGACCTCGCCGACA
AACGATTAACCGACTTGTCCGGGGGACAACGTCAGCGGGCATTTCTGGCAATGCTGCTGGCACAGGATACCCCCGTCGTC
CTGCTCGATGAACCGACCACCTACCTCGATATCAATCATCAGGTTGAGTTAATGAAACTACTGCGTGAACTCAATCAGGC
TGGCAAAACGGTCGTAACCGTCCTGCACGATCTGAATCAGGCCAGCCGCTACTGCGATCATCTGGTAATGCTGGCGGGTG
GGCGCGTGATAGCGCAGGGATCGCCGCACGAGGTCATGACGCCGGCATTATTACAGCAGGTGTTCAGCATTGATGCGGAG
ATCCACGCCGAACCCGTATCAGGCCAGCCGATGTGCGTGGTGCGGTAA

Protein sequence : 
MELTTQNLTAGYGDKRILDELSLSLPAGKITALLGPNGCGKSTLLKCFAKLLTPESGAIELNGKPLSAFSARQLSRHLAL
LPQQHLTPEGITVRDLVAYGRSPWLSLWGRLSQDDRQRVQRAMEKTHIVDLADKRLTDLSGGQRQRAFLAMLLAQDTPVV
LLDEPTTYLDINHQVELMKLLRELNQAGKTVVTVLHDLNQASRYCDHLVMLAGGRVIAQGSPHEVMTPALLQQVFSIDAE
IHAEPVSGQPMCVVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-93 70
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-55 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-55 50
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-55 50
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-55 50
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-55 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-54 44
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-53 43
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-53 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-54 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-54 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-54 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-54 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_0971 YP_003016557.1 ABC transporter-like protein BAC0164 Protein 3e-93 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_0971 YP_003016557.1 ABC transporter-like protein VFG1042 Protein 3e-93 70
PC1_0971 YP_003016557.1 ABC transporter-like protein VFG0925 Protein 8e-55 47