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Name : PC1_0825 (PC1_0825) Accession : YP_003016413.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 963642 - 966179 bp Length : 2538 bp Strand : - Note : PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eca:ECA0942 putative outer membrane usher protein DNA sequence : ATGGATATCTACAACGCTGTATCTGTTCAAGCACATATTCCTATGGCAATGAAGAATCTTACGTTCAAAGAAAAAATAAA ATCAGCCTTATTTCGCTACGGTTTTTTTATTTTTTCTTTGAATACAACAGCGCTCAGTGCAACGGAATTTAACGTTAACG TACTGGATGTCGATGAGCGTAGTGACATTGATCTTAGCCATTTTTCCGATCCTGAATACGTCACGCCCGGCACCTATCTT TTATCAATAAAAGTGAATGCGCGTGAAATACAGCAGGAGATGATTAGCTACCTGCCGGAAGGCAACCATCAGGCTCGGCC AACGGCCTGCCTCTCGCCTGAACTCGTTGATAAGCTGGCGCTGAAGAAAGAAGCACGCGACAAGGTCGAGCGATGGAATA ACGGCGAGTGTGTCGATCTGACGCCCATTGCTGGCGTGAAAGTGTCTAACCAGATAGGTATGGGAACGCTGAATATTACG ATCCCTCAGGCCTGGCTGGCGTACAGCGATAGCAACTGGATTCCGCCCGAACAGTGGGATCACGGTATCGGCGGGGCGCT GCTGGACTATAACCTCGTGGGTAACGTACGTCGTGATACCCATGGCAGAGGCACATCACACTATCTCAGCAGCTACGGCA CTGCCGGGTTTAATCAGGGAGCCTGGCGCTACCGTGCCGATTACCGCTATTTTCTGCAAAAATCGCGCAACGGAAATCGC GATCGTTTCTCGTGGGATCAGTTTTACGCCTATCGCCCGCTGCCTACGCTTTCAGCCGATCTCAAACTGGGTGAAATGTA TTTCAGCAGCAACCTGTTCGATAGCTATCGCTTTACCGGCGTGTCATTAGCCAATAACGACAACATGCTCCCACCTTCGT TGCGCGGCTACGCCCCCGAAATTCGCGGCGTCGCTAAATCAAACGCTACGGTGACCGTCACGCAAAATGGCCGACTGATC TATGAAACCACCGTGCCAGCTGGCCCCTTTGCGATTCAGGATCTGAAGAACGGCGTCAGCGGCACGCTGGATGTCCGCGT GACGGAAGAAGACGGCACGGTGACGACGTTCCAGACTGAATCGGCCAACCTGCCTTACCTGACGCGGCCGGGACACGTGC AGTATAAACTCGCTGCCGGTAAACCCTCGAATACCAACCATCGCCTGCAAGGCCCAGCCTTTTCTGCCGCCGAGGCCTCA TGGGGGTTATCTAACGCGTGGTCGGTGTACGGGGGCAGTATTTTGTCCGATGGCTACCAGTCCTGGTCGGCAGGCATTGG GAAAAACCTCTACCTGCTGGGCGCGCTGTCCGCTGACGTCACACAGTCACGCGCAACGCTCCCAGCGACGTCGTCGCAAA TGGGCCATGCATTCTCACTCAACTGGTCTAAATACTTCAACTCGATCGATAGCCAGATCAGTTTCGCGGGCTACCGCTTT TCAGAAAAAACCTACATGAGCATGGCGCAGTACCTCTACGCACTGAATCTGGATAACCGCTATCGCAATGAAAAAGAGCG CTACACCATTACACTTTCCAAAAATTTCGCGACGCGCGAGTCATACTCATGGCTGAGCGGGCTATCGACCTATGTTACCT ATACGCGCCAAACCTACTGGAATGAAGCCGAACAGGATCGCTACGGGGTTTCGCTGAACAAGTACTTTGATATCGGCGCC TTTAAAGGGATTGCTGCAAATTTCGCGGCCTATCGCACCGAATTCAACCGCCGTACCGATGACAGCCTGTACCTGAGTTT TTCCATTCCGCTCGGGGAGCGAGATCGTCTGAGCTACAGCATGGGGCGCTATAACGACAGCAGCAATCAGACGCTGACCT ATTCCAATAACGCCGATCCGCGTCGGACCTGGAACCTGAGCACACGGTACGACAGCAAAGAGCATACCTACCTGAGCGGC AACTATACCCATCTGGCACCGATGACTGATGCCACCGTGGGCGTAGCCTGGCAGCAGGATCGCTATACCTACCTGAACGG CTCGCTGCGCGGCGGGATTACCGCCACCCGCCACGGCGTTGCGGCACACCCGAAAGGCAATCAAGGGGGCACCCGCATCA TGGTCGATACGGAGCAAGCGGGCGTGCAGTTCAGCGGCAGCCAGGTCGAAACCAACCGTTATGGTCTGGCCGTGATTGCC GGAACCAGCAGCTACTACGACGTGTCGACCCGCATTGATTTACAGAAATTACCGTCAACCATCGAAGCGATAACGACGGT CGTTCAGGGCACGCTGACCGAAGGAGCAATCGGCTATCGCAAATTCGACGTAGTGAGCGGAGCAAAAGTCATGGCACACG TCGCACTGGCCGATGGCACCTATCCCCCTTTCGCCGCTCAGGTCAAAAACAAGAAAGGCCGCGATATCGCCATGATCACC AACGGCGGGCAAGCCTATATCACGGGCGTCTCGCCTGATGAAACGCTGTCCGTCATCTGGGAGGGAAGAACACAGTGTTC CATCACCCTGCCCGCGACCTTAAATCACCTTGATGTGCTGCTGCTTCCCTGTAAATAA Protein sequence : MDIYNAVSVQAHIPMAMKNLTFKEKIKSALFRYGFFIFSLNTTALSATEFNVNVLDVDERSDIDLSHFSDPEYVTPGTYL LSIKVNAREIQQEMISYLPEGNHQARPTACLSPELVDKLALKKEARDKVERWNNGECVDLTPIAGVKVSNQIGMGTLNIT IPQAWLAYSDSNWIPPEQWDHGIGGALLDYNLVGNVRRDTHGRGTSHYLSSYGTAGFNQGAWRYRADYRYFLQKSRNGNR DRFSWDQFYAYRPLPTLSADLKLGEMYFSSNLFDSYRFTGVSLANNDNMLPPSLRGYAPEIRGVAKSNATVTVTQNGRLI YETTVPAGPFAIQDLKNGVSGTLDVRVTEEDGTVTTFQTESANLPYLTRPGHVQYKLAAGKPSNTNHRLQGPAFSAAEAS WGLSNAWSVYGGSILSDGYQSWSAGIGKNLYLLGALSADVTQSRATLPATSSQMGHAFSLNWSKYFNSIDSQISFAGYRF SEKTYMSMAQYLYALNLDNRYRNEKERYTITLSKNFATRESYSWLSGLSTYVTYTRQTYWNEAEQDRYGVSLNKYFDIGA FKGIAANFAAYRTEFNRRTDDSLYLSFSIPLGERDRLSYSMGRYNDSSNQTLTYSNNADPRRTWNLSTRYDSKEHTYLSG NYTHLAPMTDATVGVAWQQDRYTYLNGSLRGGITATRHGVAAHPKGNQGGTRIMVDTEQAGVQFSGSQVETNRYGLAVIA GTSSYYDVSTRIDLQKLPSTIEAITTVVQGTLTEGAIGYRKFDVVSGAKVMAHVALADGTYPPFAAQVKNKKGRDIAMIT NGGQAYITGVSPDETLSVIWEGRTQCSITLPATLNHLDVLLLPCK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 7e-161 | 44 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 9e-160 | 44 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 7e-160 | 44 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-160 | 44 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-160 | 44 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 9e-161 | 44 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 9e-167 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_0825 | YP_003016413.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 4e-161 | 44 |
| PC1_0825 | YP_003016413.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 9e-161 | 44 |
| PC1_0825 | YP_003016413.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 7e-161 | 44 |
