Gene Information

Name : PC1_0824 (PC1_0824)
Accession : YP_003016412.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : Pili assembly chaperone, N-terminal
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 962855 - 963604 bp
Length : 750 bp
Strand : -
Note : PFAM: Pili assembly chaperone, N-terminal; KEGG: eca:ECA0941 putative fimbrial chaperone

DNA sequence : 
ATGAAACACACCTTTTATCAGCGAGTCGCTGGATTCCTCATCGGCTGCCTGTTTTTGATGCCCTCAGCCTATAGCGCCCT
GAGCCTCGATCGCACCCGCGTTATTTTTAACGACGAGGAACAATCCGCGACGGTCATGTTGATGAACCAAAACGCAGAGC
ATCCCTTTCTGGCACAGTCCTGGCTGACGGACGATCGTCACAATAAAGTGAACACGCCATTGATGGTGCTGCCGCCGCTA
CAGCGCATCGAAGCGAAAGGCTATAGCCTGATCCGTCTGGTCAAGACCGAGCAAATCAGCCAATTACCAGCCGACCGCGA
ATCGCTGTTCTACCTTAACGTCCGGGAAATTCCGCCCAAGACGGACAAGCCCAACGTATTGCAGATCGCCATTCAGTCTG
AAATTAAGGTGTTCTTCCGCCCTCGCGGTGTCAAACCAGCCAAAGATGAAATATGGCAGGAAAAACTGACCATTCGAAAA
ACGGGAAACACCTTTCAGGTAGAAAACCCAACACCGTACTACATCACCGTCAGCGACATCCTGAAACAGCCTAAAGCGAC
ACGCGCCAACCCGACCAGCCTGCTAAAGGGGAAAGCCTTTATGATTGCGCCACGCTCAACCCTGCCGGTTGCGGTGAATG
ACGGGGCGATCGATCGCTTCTATCTGTACTACGTCAACGACTACGGCGGTCATCTGGAACTGCCCTTTACCTGCGTACAA
AACCAGTGCCAGCCCACAATCCATAAATAA

Protein sequence : 
MKHTFYQRVAGFLIGCLFLMPSAYSALSLDRTRVIFNDEEQSATVMLMNQNAEHPFLAQSWLTDDRHNKVNTPLMVLPPL
QRIEAKGYSLIRLVKTEQISQLPADRESLFYLNVREIPPKTDKPNVLQIAIQSEIKVFFRPRGVKPAKDEIWQEKLTIRK
TGNTFQVENPTPYYITVSDILKQPKATRANPTSLLKGKAFMIAPRSTLPVAVNDGAIDRFYLYYVNDYGGHLELPFTCVQ
NQCQPTIHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 6e-51 46
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 6e-47 42
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 8e-47 42
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-46 42
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-46 42
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 1e-46 42
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 8e-47 42
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 1e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_0824 YP_003016412.1 Pili assembly chaperone, N-terminal VFG1547 Protein 3e-47 42
PC1_0824 YP_003016412.1 Pili assembly chaperone, N-terminal VFG0896 Protein 5e-47 42
PC1_0824 YP_003016412.1 Pili assembly chaperone, N-terminal VFG0885 Protein 5e-40 41