Gene Information

Name : PC1_0645 (PC1_0645)
Accession : YP_003016236.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 747523 - 748422 bp
Length : 900 bp
Strand : +
Note : TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: eca:ECA0770 site-specific tyrosine recombinase XerD

DNA sequence : 
ATGCAAGAACACGATCAGGCACTTATCGAACAGTTTCTCGATGCGCTGTGGCTGGAAAGAAATCTGGCCGAGAATACGCT
GGCGTCTTATCGGTTGGATCTGCGCACGCTCGCGGAATGGCTTGCACATCATGATAACGACTTATTGCAGGCGCAGGCGC
TCGATCTTCAGGCGTTTCTCGCCGATAGGGTTGATGGCGGCTACAAGGCGACCAGTTCGGCCCGTTTGTTGAGCGCGATG
CGTCGCTTCTTCCAGTACCTTTATCGGGAAAAGCTGCGCAGCGACGATCCCAGTGCGGTGCTATCGTCCCCGAAACTGCC
GCAGCGTCTACCCAAAGATTTGAGCGAGGCGCAGGTTGATGCGTTGCTTAACGCACCAAGCATTGAACAGCCGCTGGAAT
TACGCGATAAGGCCATGCTTGAGGTATTGTATGCGACGGGGCTGCGTGTTTCTGAGTTGGTCGGTTTGACGATGAGCGAT
GTCAGCCTGCGGCAGGGCGTGGTTCGCGTGCTGGGAAAAGGCAATAAAGAACGCCTGGTGCCACTCGGTGAAGAAGCGGT
GTACTGGATCGAGTATTATCTGGAACATGGTCGCCCGTGGCTGCTGAATGGGCAAACGCTCGATGTGCTTTTTCCCAGCA
ATCGAGCACGGCAAATGACGCGCCAGACGTTCTGGCACCGTATTAAGTATTATGCGGTACTGGCGTCCATCGACAGCGAA
AAGCTCTCGCCGCACGTCTTGCGTCACGCGTTTGCTACCCATTTATTGAACCACGGCGCGGATTTACGGGTCGTACAGAT
GCTCTTGGGGCACAGCGATCTTTCTACGACGCAGATTTACACCCATGTGGCGACGGAGCGGCTGAAACAGCTTCACCAGC
AGCACCATCCGCGCGCATAG

Protein sequence : 
MQEHDQALIEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQALDLQAFLADRVDGGYKATSSARLLSAM
RRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLNAPSIEQPLELRDKAMLEVLYATGLRVSELVGLTMSD
VSLRQGVVRVLGKGNKERLVPLGEEAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKYYAVLASIDSE
KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 2e-60 61
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 2e-60 61