|
Name : PC1_0054 (PC1_0054) Accession : YP_003015652.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : Hcp1 family type VI secretion system effector Function : - COG functional category : S : Function unknown COG ID : COG3157 EC number : - Position : 63269 - 63787 bp Length : 519 bp Strand : - Note : TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein DNA sequence : ATGCCAACTCCATGCTATATCAGCATCGAAGGTAAAACGCAGGGCAACATCACCGCTGGTGCTTTCACGTCTGATTCTGT CGGCAACATCTATGTGGAAGGCCACGAAGACGAAATGCTGGTACAAGAATTCAAACACATCGTCACCGTACCAACCGACC CGCAGTCTGGTCAGCCATCCGGCCAGCGCGTACACAAGCCGTTCAAATTCACCGTTGCGCTGAACAAAGCGGTTCCGCTG ATGTACAACGCCCTGGCGTCCGGTGAAATGCTGCCGACAGTGACCCTGAAATGGTACCGCACATCGGTTGAAGGCAAGCA GGAGCACTTCTTCTCTACCGTGCTGACCGATTCCACCATCGTTGACATCAACTGCCAGATGCCACACTGCCAGGACCCGT CAAAACTGGATTACACCCAACTGATTGAAGTGTCACTGGCCTACCGCAAAATTGACTGGGAACACACCGTTGCCGGTACC TCCGGTTCTGATGACTGGCGTGCGCCGATCGAAGCGTAA Protein sequence : MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHIVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPL MYNALASGEMLPTVTLKWYRTSVEGKQEHFFSTVLTDSTIVDINCQMPHCQDPSKLDYTQLIEVSLAYRKIDWEHTVAGT SGSDDWRAPIEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec16 | YP_851428.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 3e-65 | 81 |
| aec16 | AAQ96710.1 | Aec16 | Not tested | AGI-1 | Protein | 2e-65 | 81 |
| HH0243 | NP_859774.1 | hypothetical protein | Not tested | HHGI1 | Protein | 1e-47 | 63 |
