Gene Information

Name : PC1_4240 (PC1_4240)
Accession : YP_003019790.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4798050 - 4798712 bp
Length : 663 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: eca:ECA0008 two-component system response regulator

DNA sequence : 
ATGAGAATATTGTTAATTGAAGACGATCGCCTGATTGGCGACGGCCTGAAAGCAGGGCTTAACAAACTGGGTTTTAATAT
TGACTGGTTTACGGAAGGTAAAGCAGGTGCCGCTGCCTTGAAGGCAGCCCCCTATGATGCGGTGGTGCTCGATCTTAGCC
TGCCGGGCATGGATGGGATGGATATCCTGCGCCAGTGGCGTCAGGCTGGGCATGACGAACCGGTGCTGATTCTGACCGCC
CGAGATGCGCTGGAACAGCGTGTTGAAGGTCTGCAGCAAGGTGCCGACGATTATTTATGTAAGCCCTTTGCGCTGACGGA
GGTTGCCGCTCGTCTGCAGGCGCTGATTCGCCGTCGTCACGGTCAGCTTCAACCGGCATTAACGCACGGTGCTGTTTCCC
TTGAGCCAGGCTCGCGAAGCGTCACGCTAAACAATGAACCGTTGATACTAAAATCCCGCGAACTGGCGTTGCTGGAGCTG
TTTTTACTCAACCCGAACCGCGTGCTCACGCGCGCGCAGTTGGAAGAAAAGCTCTACGGCTGGGACGATGATGTCTCCAG
CAATGCAGTAGAAGTACACATCCACCATCTGCGCAAAAAGCTGGGCAGCGGGTTTATCCGCACCGTGCATGGCGTTGGCT
ATATTCTGGGAGACGCACCATGA

Protein sequence : 
MRILLIEDDRLIGDGLKAGLNKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMDGMDILRQWRQAGHDEPVLILTA
RDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRHGQLQPALTHGAVSLEPGSRSVTLNNEPLILKSRELALLEL
FLLNPNRVLTRAQLEEKLYGWDDDVSSNAVEVHIHHLRKKLGSGFIRTVHGVGYILGDAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-36 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_4240 YP_003019790.1 winged helix family two component transcriptional regulator BAC0487 Protein 7e-34 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_4240 YP_003019790.1 winged helix family two component transcriptional regulator VFG0473 Protein 1e-30 43
PC1_4240 YP_003019790.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-26 41