Gene Information

Name : PC1_4220 (PC1_4220)
Accession : YP_003019770.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : glutamine synthetase, type I
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0174
EC number : -
Position : 4771023 - 4772432 bp
Length : 1410 bp
Strand : +
Note : TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: eca:ECA0029 glutamine synthetase

DNA sequence : 
ATGTCCGCAGAACATGTTTTGACGATGCTGAATGAGCACGAAGTGAAGTTTGTTGATTTACGCTTCACGGATACTAAAGG
TAAAGAGCAGCACGTCACCATTCCGGCTCATCAAGTCAATGCCGACTTCTTCGAAGAAGGTAAAATGTTTGATGGTTCCT
CGATTGGCGGCTGGAAAGGTATTAACGAGTCAGACATGGTTCTGATGCCAGATGCCAGCACCGCGATGATCGATCCGTTC
TTCGAAGATTCCACGCTGATCATTCGTTGTGACATCCTTGAGCCAGGCACCATGCAGGGCTACGATCGTGACCCACGTTC
TATCGCAAAACGTGCAGAAGATTTCCTGCGTTCTTCCGGCATTGCCGATACCGTCCTGTTCGGGCCAGAGCCAGAATTCT
TCCTGTTCGATGACATCCGTTTCGGCAGCAGCACTTCTGGTTCTCACGTTGCTATCGACGACGTCGAAGCTTACTGGAAC
TCCGGTAAAGAATACGAAGGCGGTAACAAAGGTCACCGTCCAGGTCTGAAAGGCGGCTACTTCCCAGTTCCACCAGTCGA
TTCATCACAGGACATCCGTTCTGCTATGTGTCTGACCATGGAGCAAATGGGTCTGGTTGTTGAAGCTCACCACCACGAAG
TGGCAACTGCTGGTCAGAACGAAGTGGCTACCCGCTTCAACACCATGACCAAAAAAGCTGACGAAATTCAGATCTACAAA
TATGTCGTGCATAACGTAGCTCACGCTTACGGTAAAACCGCGACCTTCATGCCAAAACCAATGTTCGGTGATAACGGTTC
TGGTATGCACTGCCACATGTCTCTGTCTAAAGACGGTACTAACCTGTTCGCTGGCGACAAATACGGCGGCCTGTCTGAAC
TGGCTCTGTTCTACATCGGCGGTGTTATCAAGCACGCTAAAGCCATCAACGCCCTAGCGAACCCGACCACCAACTCCTAC
AAGCGTCTGGTCCCAGGCTACGAAGCCCCAGTTATGCTGGCTTACTCTGCCCGTAACCGTTCTGCTTCAATCCGTATCCC
GGTTGTTGCCAGCCCGAAAGCACGTCGTATCGAAGCGCGCTTCCCGGATCCAGCAGCTAACCCATATCTGTGCTTCGCTG
CACTGCTGATGGCTGGCCTCGACGGCATCATCAACAAAATCCACCCTGGCGATGCTATGGACAAAAACCTGTACGACCTG
CCGCCAGAAGAAGAAGCAGAGATTCCAAAAGTTGCAGGTTCTCTGGACGAGGCCCTGGCTGCACTGAACGAAGACCGCGA
GTTCCTGACCCGTGGTGGCGTGTTCACCGACGACGCTATCGAAGCGTATATCGAACTGCGTAAATCTGAGATTGACCGCG
TTCGTATGACGCCGCACCCAGTTGAGTTCGAACTGTACTACAGCGTTTAA

Protein sequence : 
MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAMIDPF
FEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDFLRSSGIADTVLFGPEPEFFLFDDIRFGSSTSGSHVAIDDVEAYWN
SGKEYEGGNKGHRPGLKGGYFPVPPVDSSQDIRSAMCLTMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK
YVVHNVAHAYGKTATFMPKPMFGDNGSGMHCHMSLSKDGTNLFAGDKYGGLSELALFYIGGVIKHAKAINALANPTTNSY
KRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEARFPDPAANPYLCFAALLMAGLDGIINKIHPGDAMDKNLYDL
PPEEEAEIPKVAGSLDEALAALNEDREFLTRGGVFTDDAIEAYIELRKSEIDRVRMTPHPVEFELYYSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
glnA YP_003728749.1 glutamine synthetase Not tested cag PAI Protein 2e-100 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_4220 YP_003019770.1 glutamine synthetase, type I VFG1399 Protein 1e-114 51