Gene Information

Name : PC1_4108 (PC1_4108)
Accession : YP_003019659.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Unknown
Product : ABC transporter-like protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 4641134 - 4643005 bp
Length : 1872 bp
Strand : +
Note : PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: eca:ECA0138 ABC transporter ATP-binding protein

DNA sequence :
ATGACGGATATCATGCACGCGGGTGCCGCCACAGCACCCGGTAACGCCCCCAGACCTGTGCTGGAAATCGACGACCTGAG
CGTCAGCTTTAGCGGCCGTTCCGGCACGCATCAGGCGCTAAAAGGCATTTCCTTTACCGTCAATAAAGGGGAAGTGGTCG
CCGTGGTCGGCGAAAGTGGTTCAGGCAAGTCCGTGACGTCACTCACCGTGATGGGACTGCTGGCGGACTCTGCCAATATC
GAACGCGGCGCGCTCCGTTTTACCGCACGCGACGGCCAGCAGCATGACCTGTTGAGCATGAAAGCGGAAGCACGCCGCAA
GCTGCGCGGTCGCGATCTCGCCATGATTTTCCAGGAACCGATGACTTCGCTCAATCCGGTGCTGAAAGTCGGCGACCAGC
TCACAGAAGCGCTGCTTGACCATAAGATCTGTGATGCCGCCAGCGCGGACAAAAAAGCCCGTGAACTGCTGCACAAGGTC
CGTATCGCGGATGTCGACCGTGTGATGAAAAGCTACCCGCACTCGCTGTCCGGCGGGATGCGCCAGCGCGTGATGATCGC
ACAGGCGCTGGCCTGCGACCCACAACTGCTGATTGCCGATGAACCGACCACTGCGCTGGACGTCACCGTGCAGGCGCGCA
TTTTGCAAATCCTGCGCGACCTGCAACAGCAGAGCGACATGGCAGTGCTGTTTATTACGCACGATATGGGCGTAGTAGCG
GAAATCGCCGATCGCGTGGTGGTGATGTATCGCGGCGAAATCGTGGAGCAAGGCACCGTCGAACAGATTTTTGCCGCACC
ACAGCACCCGTATACCCAGTCGCTGCTGGCCGCCGTACCCAAACTGGGCGACATGCGCGATAGCCTGTGGCCGAAACGTT
TCCCACTGCTAGGGCAGGCTGCCGACCCGGAGAATATTGAACAAGTCACCGCCCGCTATGATGCCGAGCCGCTGTTAGAT
ATTCGCGGGCTGCGGGTTTATTACCCGATGCGCAGCGGGATTTTGTCCACCGTAACTCACCACGTTCACGCGGTAGAACA
GATCGATTTTAACGTCTGGCCGGGTGAAACGCTGGCTATCGTTGGGGAAAGCGGCTGTGGCAAATCCACCACCGGACGCG
CTCTGCTGCGTCTGGTACAGAGCGAAGCCGAAAGCATCCATTTTCAGGGCAACGAAATTTCCCAGATGAAAGAGCGTGAT
TTCCAGCCGCTGCGTCGGGAAATGCAGATGGTGTTTCAAGACCCGTATGCCTCACTCAACCCGCGCCTGACGGTCGGCTT
TACCATCGCCGAACCGCTGCTGCTCCACGGATTGGTGAAATCACTGGAAGAAGCGACACCACAGGTGCAGGCGCTGCTAA
AAAGCGTCGGCTTGCTGCCTGAGCACGCGCGCCGTTATCCGCACGAGTTTTCCGGCGGGCAGCGTCAGCGTATCGCGATT
GCTCGCGCGATGGCGCTACAGCCGCAGGTCATCATTGCTGACGAAGCCGTTTCAGCGCTGGATGTGTCGATTCAGGCACA
AGTCGTCAACCTGATGATGGATCTCCAGAAGAAAACCGGCGTGTCGTGGATTTTCATCTCGCACGATATGGCCGTTGTTG
AGCGCATCGCCAACCGCGTCGCGGTGATGTACCTCGGCCAGATTGTGGAGATCGGCCCGCGCCAGTCGGTGTTTAACGAT
CCGCAGCATCCGTATACCCGCCGCCTGTTGGCCTCAGTTCCGATTGCCGATCCAACGCGTCGCGGTACACGCCAGTTTGA
CGACAGCGAAATCCCCTCTCCTTTGCGTAAAGCAGGTGAGACCGTCGCCAAAACGCGCTACCGAGAGGTCGCGCCGCAGC
ACTGGGTCGCCGACAACGAATCGGCAGCCTGA

Protein sequence :
MTDIMHAGAATAPGNAPRPVLEIDDLSVSFSGRSGTHQALKGISFTVNKGEVVAVVGESGSGKSVTSLTVMGLLADSANI
ERGALRFTARDGQQHDLLSMKAEARRKLRGRDLAMIFQEPMTSLNPVLKVGDQLTEALLDHKICDAASADKKARELLHKV
RIADVDRVMKSYPHSLSGGMRQRVMIAQALACDPQLLIADEPTTALDVTVQARILQILRDLQQQSDMAVLFITHDMGVVA
EIADRVVVMYRGEIVEQGTVEQIFAAPQHPYTQSLLAAVPKLGDMRDSLWPKRFPLLGQAADPENIEQVTARYDAEPLLD
IRGLRVYYPMRSGILSTVTHHVHAVEQIDFNVWPGETLAIVGESGCGKSTTGRALLRLVQSEAESIHFQGNEISQMKERD
FQPLRREMQMVFQDPYASLNPRLTVGFTIAEPLLLHGLVKSLEEATPQVQALLKSVGLLPEHARRYPHEFSGGQRQRIAI
ARAMALQPQVIIADEAVSALDVSIQAQVVNLMMDLQKKTGVSWIFISHDMAVVERIANRVAVMYLGQIVEIGPRQSVFND
PQHPYTRRLLASVPIADPTRRGTRQFDDSEIPSPLRKAGETVAKTRYREVAPQHWVADNESAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 2e-82 41