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Name : PC1_3576 (PC1_3576) Accession : YP_003019127.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4032594 - 4034066 bp Length : 1473 bp Strand : + Note : PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: eca:ECA3799 hypothetical protein DNA sequence : ATGACAGACTCGTCCTTCTCCTCCGAGCATACGCTCAGCGAACTACAGACGCTGTGCCGACGTTATCAGGCATTACTACT TAACCTCGATGAACAAACACTGTCGGTTGCAGTCACGATCTCCCCTTCGGCGGAGATGATTGCCGCGCTGCGTTTTGCCA GCAATCGCCGCATTATGGTGGAGCAATGGCCGCAGGCCAGAATGGAACAGCAGCTTAACCCCGTGAATGCCGTTGCCGAG CCCACAGAGACTTACCATACCAGCATTTATAACAACGGCACCGGGCAACAAGATCATGACGACGACTCCCCCGTTGCACA ATTTATCCATCAAACGTTGCGTCTCGCGGTTCAGCGACGCGCCTCGGATATTCACTTTGAGCCGTTACTGGACAACTATC GCGTACGGCTACGCATTGATGGCGTGTTACAGGCAATATCCGCACCGCCTCCCGAACTGACAAACCGTATTACCGCGCGG CTGAAAATCATGGGTAAGTTGAACATCGCCGAACGGCGATTGCCGCAAGACGGTCAGTTCAGCCTGATGCTGGATCAACA AACCTACTCGTTACGTATCGCTACACTCCCTGTACAGCAGGGAGAAAAAGTGGTGTTGCGTATTTTGCAAACGCACCAGC AGGAGCTAGCGCTAGATAAACTTGGGCTTACCGCAAAAGCATTACAGCAGGTGATTCACGTGCTGAGCGCCTCACAGGGG ATGCTGTTAGTTACGGGCCCGACAGGCAGTGGAAAAACGGTCACGCTTTACAGCGCGATACGCTGGCTGAACGATAGCAG CCGCAATATCTGTAGCGTAGAAGATCCCGTTGAGATCCCCTTGCAGGGTATCAACCAAACGGCAATCAACCCTAAAGCCG AGTTGGAATTTGGCCGAGTGTTACGTGCGCTGCTACGTCAGGATCCCGACGTGATTATGATCGGCGAAATCCGCGATGCC GAAACCGCAGAAATTGCGGTAAAAGCCGCACAAACCGGTCATTTGGTCATGTCCACGTTGCATACCAACTCTGCCGTAGA AACGCTAACCCGACTCAGTCACCTGGGCATCCCCGGCTATCTGTTAGCTGCGGCGCTAAAGCTCATCATCGCACAACGCC TTGTACGTCGCTTATGTCCACACTGTAAAACGCCGGGAGAATCACTACTTTCTCTGCCAAACGACATATGGCAAGGGCCA CTGCACCATTGGCAAGCCCGCGGCTGTAGCCACTGTTTCTCTGGCTACTATGGCCGCGTCGCGATCTATGAATTACTTCC CATCACGCCAGATTTTCAGGCAGCGCTAGCGGGCAATGCCAGCGCAGGGGAATTATCTGCGCTATCTCGCCATTCAGGTT TCCCAACGTTGTTGGCTGCGGGTCTCGAGTTGGTCAACGACGGCCTGACCTCCCTCGCTGAAGTCTATCGTGTTGTGGGC GATGAACACGCTATGAATCAGGAGGCGCAATGA Protein sequence : MTDSSFSSEHTLSELQTLCRRYQALLLNLDEQTLSVAVTISPSAEMIAALRFASNRRIMVEQWPQARMEQQLNPVNAVAE PTETYHTSIYNNGTGQQDHDDDSPVAQFIHQTLRLAVQRRASDIHFEPLLDNYRVRLRIDGVLQAISAPPPELTNRITAR LKIMGKLNIAERRLPQDGQFSLMLDQQTYSLRIATLPVQQGEKVVLRILQTHQQELALDKLGLTAKALQQVIHVLSASQG MLLVTGPTGSGKTVTLYSAIRWLNDSSRNICSVEDPVEIPLQGINQTAINPKAELEFGRVLRALLRQDPDVIMIGEIRDA ETAEIAVKAAQTGHLVMSTLHTNSAVETLTRLSHLGIPGYLLAAALKLIIAQRLVRRLCPHCKTPGESLLSLPNDIWQGP LHHWQARGCSHCFSGYYGRVAIYELLPITPDFQAALAGNASAGELSALSRHSGFPTLLAAGLELVNDGLTSLAEVYRVVG DEHAMNQEAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-70 | 43 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-70 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_3576 | YP_003019127.1 | type II secretion system protein E | VFG2426 | Protein | 3e-78 | 47 |
| PC1_3576 | YP_003019127.1 | type II secretion system protein E | VFG0182 | Protein | 2e-75 | 46 |
| PC1_3576 | YP_003019127.1 | type II secretion system protein E | VFG1876 | Protein | 5e-75 | 44 |
| PC1_3576 | YP_003019127.1 | type II secretion system protein E | VFG2048 | Protein | 2e-71 | 44 |
