Gene Information

Name : PC1_3546 (PC1_3546)
Accession : YP_003019098.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 3995248 - 3995574 bp
Length : 327 bp
Strand : +
Note : PFAM: small multidrug resistance protein; KEGG: eca:ECA3771 putative multidrug resistance protein

DNA sequence : 
ATGTTAAACGGATTCCTCTGGCTGGCACTTTCCATTGGTTCAGAAATTACCGGCACGTCAATGATCAAAAAAACCGATGG
ATTTAAAAAACTCTCACCTTCCGTTATCGTGATCCTCGCTTATTGCCTTTGCTATTTTTCATTAACGCGGGCAATGGGCT
ACTTACCCGTAGGGATTGCCTATTCCCTCTGGTGCGGCTTTGGCATCGTCGGCGTAACGTTTATTTCGATGCTGCTTTAT
AAACAGAAACCGGATCTCCCCGCCGTCTTCTCTATGGCGTTAATTATCAGCGGGGGAATTATCATGAATATGTATTCGAG
CATGTAA

Protein sequence : 
MLNGFLWLALSIGSEITGTSMIKKTDGFKKLSPSVIVILAYCLCYFSLTRAMGYLPVGIAYSLWCGFGIVGVTFISMLLY
KQKPDLPAVFSMALIISGGIIMNMYSSM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 3e-35 80
unnamed CAD42068.1 hypothetical protein Not tested PAI II 536 Protein 4e-16 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3546 YP_003019098.1 small multidrug resistance protein BAC0324 Protein 2e-13 43
PC1_3546 YP_003019098.1 small multidrug resistance protein CP004022.1.gene1549. Protein 3e-19 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3546 YP_003019098.1 small multidrug resistance protein VFG1586 Protein 1e-35 80
PC1_3546 YP_003019098.1 small multidrug resistance protein VFG1587 Protein 2e-16 43