Gene Information

Name : PC1_3545 (PC1_3545)
Accession : YP_003019097.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 3994814 - 3995230 bp
Length : 417 bp
Strand : +
Note : PFAM: small multidrug resistance protein; KEGG: eca:ECA3770 quaternary ammonium compound resistance protein

DNA sequence : 
ATGTCACTGAGAAAGCAATCATGGCTTTGGATGTTATTAGTTATCCTGTCAGAAACGTCTGCTACCTCTACGTTAAAAAT
GTTTGATAATAGTCAAGGGATAACAAAAGTAGCGTTATTAGCGGTAATTATTCTGCTGTACTGCGTTTGCTATTATTCGC
TATCAAAAGCGGTAAAACATCTTCCCGTGGGCTTAGCCTATGCAACCTGGTCCGGTACGGGGATCTTATTGGTTTCGACG
CTCAGTATTATCTTTTACGGCCAGCGTCCTGATATTCCGGCCATCATTGGCATGAGCGTGATTGCCGCTGGCATAGCAAT
CATGAACCTCTTCTCTAAGATGGGCGCTGATGAACAGCCCGAAATACTCACGGACAGCGTTCCGAATCCACCGTTAAACA
CCAAAATCATCCATTAA

Protein sequence : 
MSLRKQSWLWMLLVILSETSATSTLKMFDNSQGITKVALLAVIILLYCVCYYSLSKAVKHLPVGLAYATWSGTGILLVST
LSIIFYGQRPDIPAIIGMSVIAAGIAIMNLFSKMGADEQPEILTDSVPNPPLNTKIIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42068.1 hypothetical protein Not tested PAI II 536 Protein 7e-43 69
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 2e-14 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3545 YP_003019097.1 small multidrug resistance protein BAC0002 Protein 3e-12 46
PC1_3545 YP_003019097.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 3e-12 46
PC1_3545 YP_003019097.1 small multidrug resistance protein BAC0377 Protein 6e-13 44
PC1_3545 YP_003019097.1 small multidrug resistance protein BAC0150 Protein 1e-12 43
PC1_3545 YP_003019097.1 small multidrug resistance protein BAC0324 Protein 3e-15 42
PC1_3545 YP_003019097.1 small multidrug resistance protein CP004022.1.gene1549. Protein 2e-14 42
PC1_3545 YP_003019097.1 small multidrug resistance protein NC_002695.1.913273.p Protein 2e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3545 YP_003019097.1 small multidrug resistance protein VFG1587 Protein 3e-43 69
PC1_3545 YP_003019097.1 small multidrug resistance protein VFG1586 Protein 6e-15 41