Gene Information

Name : PC1_3498 (PC1_3498)
Accession : YP_003019050.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 3942505 - 3943911 bp
Length : 1407 bp
Strand : +
Note : KEGG: eca:ECA3664 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase

DNA sequence :
ATGGCAGAGAAAAGACCCACCAATAAATCGAATGAACCCCGTGACCGCCAGATGGAAGGTCTGAAACTTCCGCCACATTC
GCTGGAAGCGGAGCAATCGGTATTGGGTGGCCTGATGCTCGACAATGAACGCTGGGATAATGTCGCCGAGCGTGTTGTCG
CGAACGACTTCTATAACCGCGCCCACCGCCTGATTTTCACCGAGATGCAGCGTCTGCTCGAAATGAGCAAACCGATCGAC
CTGATTACCCTGTCCGAATCGCTCGAACTGCAAGGCTCGCTGGAATCCGCGGGTGGCTTCGCCTATCTGGCTGAGCTCGC
TAAAAACACGCCGAGCGCCGCCAATATCGGTGCCTATGCCGATATCGTGCGCGAGCGCGCCGTGGTGCGTGAAATGATCT
CCGTCGCCAATGAGATCGCCGATGCGGGTTACGATCCACAAGGGCGTAGCAGTGAAGATCTGCTCGATCTCGCGGAATCC
CGCGTCTTCCAAATCGCCGAAAACCGCGCCAGCAAAGATGAAGGCCCAAAAAGCATCGACCGCATTCTGGAAGATACCGT
TTCTCGTATCGAACAGCTGTATCAGCGCCCACACGACGGCGTAACCGGTGTGTCTACCGGCTATCAGGATCTGGATAAAA
AGACCGCAGGCTTGCAGAAATCTGACCTGATTATCGTCGCCGCCCGTCCATCGATGGGGAAAACCACCTTCGCGATGAAC
CTGTGTGAAAACGCCGCGATGATGCAGGATAAACCGGTGCTAATCTTCAGTCTGGAAATGCCCGGCGAGCAGATCATGAT
GCGTATGCTCGCGTCGCTGTCTCGCGTGGATCAAACCCGCATTCGTACCGGTCAGTTGGACGATGAAGACTGGGCGCGTA
TTTCCAGCACCATGGGGATCCTGCTGGAAAAGCGCAACATGTACATTGATGATTCCTCCGGTCTGACGCCGACCGAAGTG
CGATCCCGCGCCCGCCGTGTGTTCCGTGAACATGACGGCCTGAGCCTGATCATGATCGACTACCTGCAATTGATGCGCGT
GCCGTCGCTGTCCGATAACCGTACGCTGGAAATTGCCGAAATTTCCCGCTCACTCAAAGCGCTGGCAAAAGAATTGCAGG
TTCCGGTCGTCGCTCTGTCGCAGCTTAACCGTAGTCTGGAACAGCGCGCCGATAAGCGCCCGGTTAACTCGGATCTGCGT
GAATCCGGCTCCATCGAGCAGGATGCCGACCTGATTATGTTTATCTATCGTGATGAGGTTTATCACGAAAACAGCGATCT
GAAAGGCATCGCTGAAATCATTTTGGGGAAACAGCGTAACGGCCCGATTGGTTCCGTTCGTTTGACCTTTAACGGGCAGT
GGTCGCGCTTTGATAACTATGCCGGCCCACAATATGACGATGAATAA

Protein sequence :
MAEKRPTNKSNEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVAERVVANDFYNRAHRLIFTEMQRLLEMSKPID
LITLSESLELQGSLESAGGFAYLAELAKNTPSAANIGAYADIVRERAVVREMISVANEIADAGYDPQGRSSEDLLDLAES
RVFQIAENRASKDEGPKSIDRILEDTVSRIEQLYQRPHDGVTGVSTGYQDLDKKTAGLQKSDLIIVAARPSMGKTTFAMN
LCENAAMMQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGILLEKRNMYIDDSSGLTPTEV
RSRARRVFREHDGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLR
ESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIILGKQRNGPIGSVRLTFNGQWSRFDNYAGPQYDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 1e-93 54
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 2e-98 53
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 6e-98 53
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-97 53
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 3e-84 50
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 3e-84 50
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 1e-95 49
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 5e-82 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 8e-76 46