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Name : PC1_0342 (PC1_0342) Accession : YP_003015937.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : TRAP dicarboxylate transporter subunit DctM Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1593 EC number : - Position : 396934 - 398226 bp Length : 1293 bp Strand : - Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: eca:ECA0355 DedA family membrane protein DNA sequence : ATGGATGCATTTATTCTGATTGCCTCACTGGCCGTGTTGTTAGCGGTCGGTGTTCCCGTCGCCTACGCGGTAGGGTTGAG CGCCATTGTTGGCGCGCTCTGGATCGATCTGCCGCTTGAGGCTGTCATGATCCAGGTTACCAACGGCGTGAACAAATTTT CGCTGCTGGCAATTCCTTTCTTTATTCTGGCTGGGGCAATTATGGCCGAAGGCGGGATTGCTCGTCGGCTGGTCAGCTTC GCTTACATCTTTGTCGGCTTTATTCGCGGCGGCTTATCGTTGGTTAATATCGTCGCCTCTACCTTTTTCGGCGCGATATC TGGCTCCTCCGTCGCAGACACAGCCTCAATCGGCTCGGTGATGATCCCGGAAATGGAGAAGAAAGGTTATCCGCGCGACT TCTCCGCCGCCGTGACCGCCAGCGGATCCGTACAGGCCATTTTGACACCGCCGAGTCACAACTCCGTGATCTATTCGCTG GCAACCGGCGGTACGGTTTCAATTGCCTCGCTGTTTATCGCAGGGATCCTGCCTGGTCTGCTGCTCAGCCTGACCATGAT GGTGATGTGCGTCGGCTTTGCCCATCGCCGCGGCTATCCAAAAGGCGAACGTGTGCCGTTCCGTCAGGCGCTGAAAATCT TTGTCGATACCCTATGGGGGCTGATGACGGTCGTCATTATCATGGGGGGGATTCTGTCAGGTATTTTTACCGCGACCGAG TCTGCGGCCATCGCCTGTCTGTGGTCCTTCTTCGTGACTATGTTTATCTATAAAGATTACAAGTGGTCGGAACTGCCCAA GCTGATGTACCGCACGGTCAAAACCGTCACGATCGTGATGATCCTGATCGGTTTCGCCGCCGCATTCGGTGCCATCATGA CCTACATGCAGTTGCCCGCACGCATCACCGAGTTTTTTACCTCCATCTCGGATAACAAATACGTCATCCTGATGTGTATT AACATCATGCTGCTTCTGCTGGGTACGCTGATGGATATGGCGCCGCTGATCCTGATCCTGACACCTGTTTTGCTGCCCGT CGCTCTCTCGCTCGGCATCGATCCGGTGCATTTCGGCATGATCATGTTGGTGAACCTCGGGATTGGTCTGATTACACCAC CGGTGGGATCAGTGCTTTTCGTCGCCAGTGCGGTGAGTAAACAGAAGATAGAACAGGTCGTTAAAGCGATGCTGCCCTTC TACTGTGGGCTCTTTCTTGTGCTGATGCTGGTCACGTATATTCCGGCCATTTCGCTGTGGCTGCCCAAACTCTTTGGCGT TCATACGGGTTAA Protein sequence : MDAFILIASLAVLLAVGVPVAYAVGLSAIVGALWIDLPLEAVMIQVTNGVNKFSLLAIPFFILAGAIMAEGGIARRLVSF AYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSVMIPEMEKKGYPRDFSAAVTASGSVQAILTPPSHNSVIYSL ATGGTVSIASLFIAGILPGLLLSLTMMVMCVGFAHRRGYPKGERVPFRQALKIFVDTLWGLMTVVIIMGGILSGIFTATE SAAIACLWSFFVTMFIYKDYKWSELPKLMYRTVKTVTIVMILIGFAAAFGAIMTYMQLPARITEFFTSISDNKYVILMCI NIMLLLLGTLMDMAPLILILTPVLLPVALSLGIDPVHFGMIMLVNLGIGLITPPVGSVLFVASAVSKQKIEQVVKAMLPF YCGLFLVLMLVTYIPAISLWLPKLFGVHTG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 2e-50 | 41 |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 2e-50 | 41 |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 2e-50 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_0342 | YP_003015937.1 | TRAP dicarboxylate transporter subunit DctM | VFG1110 | Protein | 9e-51 | 41 |
