Gene Information

Name : PC1_3281 (PC1_3281)
Accession : YP_003018833.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3695126 - 3696289 bp
Length : 1164 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: eca:ECA3460 phage integrase

DNA sequence : 
ATGGCACTCAACGATATGCAGGTTCGTAGCGCGAAGCCTGAAGAAAAGCCCTATACACTCGGTGACGGCTTAGGGCTGTC
ATTACTTATTGAGCCGACAGGCAGCAAAAGCTGGCGTTTTCGCTATCGTTTCGGCGGTAAGCCCAAGATGATCTCTTTCG
GCGCTTACCCATTGGTGAGTCTGGCTGAAGCGCGTAAAAAACGCGATGAAGCACGTAAGCAGGTATTAGACGGTATTAAT
CCAAGCGAGCAACGCAAAGCACAAAAACTTAATCTGATGTCTGAATCAGAGAATACCTTTGAAATAATCGCATGTGAGTG
GCACGCCATGAAAAGTGCGCGTTGGTCGGCGGGGTACGCTTCTGACATCATGGAAGCTTTCAGGAATGATATTTTCCCCT
ATGTAGGGAAGCGCTCCATCGCAGAGATAAAACCGCTAGAACTGCTTAATGTGCTGCGCAAGATGGAGAAGCGCGGCGCA
TTAGAGAAAATGAAAAAGGTTCGCCAGCGTTGCTCGGAGGTATTTCGCTATGCGATAGCAACGGGGAGGGCAGAGATCAA
CCCTGCGGCAGACTTGACCAGTGTACTTACCACGCATAAAGCACAGCATTATCCCTTCCTTAAAGCCGATGAGATCCCAA
CGTTCATTCAGGCGGTTGAGTCCTATACCGGTAGCGTATTAGTGCAAATCGCGGCCAAATTGCTGATGCTGACCGGTGTG
AGAACAATAGAACTCCGTGCGGCTGAGTGGTCAGAATTTGATCTCGAACACGCAATCTGGGAAATTCCAGCGGAAAGAAT
GAAAAAGCGGCGTTCTCATCTTGTCCCTTTGTCCACACAAGCGCTATCTTTGTTAAGCAAGTTACAAACCATCAGCGGCA
ACTATAAATATGTGTTTCCCGGTCGGAACGATCCCAATAAGCCCATGAGCGAGGGAAGCATCAACCGTATGATAAAGCAT
ATAGGTTATGAGGGACGGTTAACGGGACATGGTTTCAGACATACCATGTCCACTATCTTGCATGAGAAGGGCTATGACTC
CGCTTGGATTGAAATGCAGTTGGCGCATGTGGATAAGAATAGCATTCGTGGGACTTATAATCATGCTCTGTATCTTGAAC
AACGGCGGGATATGATGCAGTGGTATTCTAATTGTTTTTTATAA

Protein sequence : 
MALNDMQVRSAKPEEKPYTLGDGLGLSLLIEPTGSKSWRFRYRFGGKPKMISFGAYPLVSLAEARKKRDEARKQVLDGIN
PSEQRKAQKLNLMSESENTFEIIACEWHAMKSARWSAGYASDIMEAFRNDIFPYVGKRSIAEIKPLELLNVLRKMEKRGA
LEKMKKVRQRCSEVFRYAIATGRAEINPAADLTSVLTTHKAQHYPFLKADEIPTFIQAVESYTGSVLVQIAAKLLMLTGV
RTIELRAAEWSEFDLEHAIWEIPAERMKKRRSHLVPLSTQALSLLSKLQTISGNYKYVFPGRNDPNKPMSEGSINRMIKH
IGYEGRLTGHGFRHTMSTILHEKGYDSAWIEMQLAHVDKNSIRGTYNHALYLEQRRDMMQWYSNCFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 4e-122 64
int CAC39282.1 integrase Not tested LPA Protein 4e-123 62
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-123 62
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-122 61
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-122 61
int ACU09430.1 integrase Not tested LEE Protein 1e-122 61
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-122 61
int AAD44730.1 Int Not tested SHI-2 Protein 2e-122 61
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-122 61
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 5e-122 61
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 5e-122 61
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-121 59
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-74 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-74 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-71 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 8e-72 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-71 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-71 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-71 41
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 1e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3281 YP_003018833.1 integrase family protein VFG0783 Protein 7e-123 61
PC1_3281 YP_003018833.1 integrase family protein VFG0598 Protein 2e-122 61