Gene Information

Name : PC1_3255 (PC1_3255)
Accession : YP_003018811.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 3671740 - 3672243 bp
Length : 504 bp
Strand : -
Note : TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: eca:ECA3445 hypothetical protein

DNA sequence : 
ATGGCAAAAGGAACTGACGGTGCATCTGTCGCACCAAAGGAACGTATTAATATCAAATATGTTCCAGCCACTGGTGGTCA
GCAGGCGGAAATAGAATTGCCGTTGACGCTGATGATCGTGGGAAATATGAAAGGGCGCACAGAGGAAACGCCGATCGAAG
AACGTCAGACCGTCTCGATCGACAAGAACAACTTTACCTCGGTGATGAAAGAAGCAGAGCTGGAACTGAATTTCAGTGTG
CCAAACCGCCTTGAAGAAGAAAGCCAGGATGACCTGCCAGTGAAACTGAGCATCGGCGGTCTGAATGATTTCTCCCCTGA
CCGTATCGCCCAACAGGTGCCTGAGTTGCGTAAGTTGCTTGATTTACGTGAGGCGCTGGTTGCGCTGAAAGGCCCCCTCG
GCAATATTCCCTCATTCCGTAATCGTTTGCAGGATCTGTTGTCCAGCGAAGAAGCCAGAGAGCAGCTTTTGAAAGAGCTC
GATCTGGTAAAACCCGCCGAATAA

Protein sequence : 
MAKGTDGASVAPKERINIKYVPATGGQQAEIELPLTLMIVGNMKGRTEETPIEERQTVSIDKNNFTSVMKEAELELNFSV
PNRLEEESQDDLPVKLSIGGLNDFSPDRIAQQVPELRKLLDLREALVALKGPLGNIPSFRNRLQDLLSSEEAREQLLKEL
DLVKPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 2e-35 53
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 8e-43 51
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 6e-43 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3255 YP_003018811.1 type VI secretion protein VFG2092 Protein 1e-49 61
PC1_3255 YP_003018811.1 type VI secretion protein VFG2474 Protein 1e-37 49