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Name : PC1_3252 (PC1_3252) Accession : YP_003018808.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : type VI secretion protein Function : - COG functional category : S : Function unknown COG ID : COG3519 EC number : - Position : 3668023 - 3669789 bp Length : 1767 bp Strand : - Note : TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: eca:ECA3442 hypothetical protein DNA sequence : ATGTCACTGGAACATTTTTTCAGGGATGAGCTGACCTACTTGCGCCTGCAAGGGCGTGAATTCGCCAAGGCGCACCCTGA GCTTACCCGATTTTTGTCAGAACAGACCACGGATCCAGACGTCGAGCGTCTGCTGGAAGGGTTCGCCTTTTTGACAGGGA GCCTGCGGGCGAAGATCGAGGACGAATTTCCGGAGCTGACACACGGTCTGCTGGGCATGCTGTGGCCTAATTACCTGCGC CCGGTACCGAGCATGACGATTATGCAGTTTTCGGTACTCCCCGGCGCAATTGCCCAACCGGCGTTTGTTGCGCGCGGCTG TGAGCTTGATAGCCTGCCGATTGATGATGTGATCTGTCATTTTCAGACCTGTCACGATGCCTGGATTTATCCGGCGGATA TCCGCGAGATCAAGGTACAGAGCGGCAACGATCTTTCCACCATCACGCTGGATATTGGGTTGCATGGCCCGCTATCGCTC AGCGATTTGCAACTCGACAAGCTGCGCTTTTATCTGGGTGGTGATACCTATACGGCCTACGAACTCTATTTCTGGATTGC CAGCCAGCTGTCACATATTGAGCTGGAAATTGATGGTCAACGCTTCCGTCAGGAAGCCAGCGTACTGAAGACGGTCGGAT TTGAACGCGAAGATGCGCTATTGCCGTACCCCGGCAACGTTTACTCGGGCTATCGCATTTTGCAGGAATACTTCTGTTTT CCTGAAAGCTTCCTCTTTTTCCAACTCGCGGGCGCGGTATGGCCGGATCTCCCGCTGACGGTAACGGAATTCCGTCTGCA CTTTTGCTTCGATCGCCCGCTGCCAGCGGAACTGAAGATTCGTCCTGATTCATTCATGCTCAACTGTGTGCCGGCGATCA ATCTCTTCCAGCATGATAGCGAGCCGATCAACCTCAGCGGTCGCCAGACGGATTATCCGCTGAAGGCCAGCTATCGTAAC GCTGATAGCTTTGAAATCTTCTCTGTGGATAAGGTGGAAGGCTGGGTTGAAGGGAATTCCGGGCGTGCTCGCGGCATTCC ACGAACCTATCAGCCTTTTGAGAGCTTTCAGCACCAAATCGAGCGCGCTAAAGGACGGCTGGCGCTTTATTACCGCATTC GGGTAAGAGAGGCGGTGAACGGCAACGGCTTTGATCACATGCTCTCTTTTGTCCGTGGCGATGAGCAGGAAGTGATTGAT TTGGATGAATCCATTTCGGTTACCCTGACCTGCACCAATCGCTCGCGTGCGGCACAGTTACCTGTCGGGGCGATCTGCGT GCCGACCGGGAACTCGCCGTCTTTCGCGACATTTCGCAATCTGGTGCGGCCGACGCGACCGCTGCGGCCTGCGATGGACG GTAGCCTGCACTGGACGCTGATCTCCAACCTGTCTCTGAACTATGTGTCGCTGCTGCGGCGCGATGCACTGGTACAGATT CTGCGTACCTATGATTTCCCGGCGCTGCACGACAAGCAGGCCGAACAGGCTTCGCGTAAGCGTCTGGCGGGTATCGAATC TATCGAAACCACCCCTATCGATCGTCTGGTTCAGGGGATGCCGGTTCGCGGCTTGAAATCCATTCTGTCAGTACGGCAAT CCGCGTTTTCCAGTGAAGGAGAACTCTATCTGTTCAGTACGGTGCTGGCGCACTTCTTCTCGCTATACGCCAGCGTCAAC GCTTTCCACCTGTTGGAAGTGGTCAACATCGATAACAAGGAGCGCTACCGATGGCCGGTACAGATAGGTCAACACTCAAT GATGTGA Protein sequence : MSLEHFFRDELTYLRLQGREFAKAHPELTRFLSEQTTDPDVERLLEGFAFLTGSLRAKIEDEFPELTHGLLGMLWPNYLR PVPSMTIMQFSVLPGAIAQPAFVARGCELDSLPIDDVICHFQTCHDAWIYPADIREIKVQSGNDLSTITLDIGLHGPLSL SDLQLDKLRFYLGGDTYTAYELYFWIASQLSHIELEIDGQRFRQEASVLKTVGFEREDALLPYPGNVYSGYRILQEYFCF PESFLFFQLAGAVWPDLPLTVTEFRLHFCFDRPLPAELKIRPDSFMLNCVPAINLFQHDSEPINLSGRQTDYPLKASYRN ADSFEIFSVDKVEGWVEGNSGRARGIPRTYQPFESFQHQIERAKGRLALYYRIRVREAVNGNGFDHMLSFVRGDEQEVID LDESISVTLTCTNRSRAAQLPVGAICVPTGNSPSFATFRNLVRPTRPLRPAMDGSLHWTLISNLSLNYVSLLRRDALVQI LRTYDFPALHDKQAEQASRKRLAGIESIETTPIDRLVQGMPVRGLKSILSVRQSAFSSEGELYLFSTVLAHFFSLYASVN AFHLLEVVNIDNKERYRWPVQIGQHSMM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| APECO1_1761 | YP_851424.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 2e-128 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_3252 | YP_003018808.1 | type VI secretion protein | VFG2078 | Protein | 9e-159 | 51 |
