Gene Information

Name : PC1_3249 (PC1_3249)
Accession : YP_003018805.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : type VI secretion lipoprotein, VC_A0113 family
Function : -
COG functional category : S : Function unknown
COG ID : COG3521
EC number : -
Position : 3665317 - 3665838 bp
Length : 522 bp
Strand : -
Note : TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: eca:ECA3439 putative lipoprotein

DNA sequence :
ATGCTGCGAGCATTGTGCTTATGTTCCCTGATGTTCGTGCTGTCAGGGTGCACCACGCTGGGCAAGATGGCGCAGGTGGC
GGCGAATCCTGACATTCAGGTTGGCAGCAACAATCATCAGCCTTCTACCGTGGGTTTCAGCCTGTTGGCGGAGCCGGACG
TTAACCCGAACGACAGCGGTGAAGCCGCGCCTATCGAATTCCAACTGGTTCTGCTGGCTGAAGATTCACGTCTGTTGGCC
ACCGATTACGATCAGGTAACGACGGATATCGAAAAGGCGTTAGCCAAGAATTACATCAATCATCAGGACTACACGCTGCT
GCCGGGACAGTTCAAATACCTGCCGCCTGAAGCGCTGGATGAAAAGGTGCATTACCTCGGTGTGATCGCGCGCTATGCGG
ATTCGGAAAGCTCGGAATGGCGCAAAGTCATCAAGCTAAAAAATACCGGGCAAACGTATCAGATCCTCGTGCACCTGCGC
CGGGATGAAGTCGAAATCAAAAAAGACCAAGAAGAAGAATAA

Protein sequence :
MLRALCLCSLMFVLSGCTTLGKMAQVAANPDIQVGSNNHQPSTVGFSLLAEPDVNPNDSGEAAPIEFQLVLLAEDSRLLA
TDYDQVTTDIEKALAKNYINHQDYTLLPGQFKYLPPEALDEKVHYLGVIARYADSESSEWRKVIKLKNTGQTYQILVHLR
RDEVEIKKDQEEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec24 AAQ96718.1 Aec24 Not tested AGI-1 Protein 4e-36 49
aec24 YP_851421.1 hypothetical protein Not tested PAI II APEC-O1 Protein 5e-36 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3249 YP_003018805.1 type VI secretion lipoprotein, VC_A0113 family VFG2081 Protein 4e-26 42