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Name : PC1_3248 (PC1_3248) Accession : YP_003018804.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : type VI secretion protein Function : - COG functional category : S : Function unknown COG ID : COG3522 EC number : - Position : 3663977 - 3665314 bp Length : 1338 bp Strand : - Note : TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: eca:ECA3438 hypothetical protein DNA sequence : ATGTCGAGTCGCAATCGCATTATCTGGCGGGAAGGCCTGTTCATTAAACCGCAGCATTTTCAACAGCAGCAAAGACACAC CGATTACGCACTGCATGCGCGTCTCAGCGCTCTCAGTGATTATTTCTATGGCTTGCAGTCGCTGGCGATTAACGAGGAAT ACCTCAATTTTGGCCGTATCGCGCTGGTGAACGCCAGCGGGGTGATGCCGGACGGCACCGTGTTCAATATTCCGGGTGAT GACGCTCTGCCACTGCCGCTGGAAATTACCGATGTGGCGCTGGCAAACCAGAAAGTGTATCTGGCGTTGCCGCTGGCGGT GAATGGCGTCAGTGAAGTCGGTCAGCCGGGGCAGGGGATCGCCAGCCGCTTGCAATCGCATCGACATGACGTGCGCGATC TGCACAGCGACGGCGGCGATATCGTTTCTCTGGAGGTCGGTAAGGTCAGCCTGCGTCTGATGCTCGATCGTGACGATCGC AGCGCTTATGCCTCGCTGGCGATTGCCAACATTCTGGATAAACGTCCTGACGGCGGCTTAATTCTGGATCCTAACTTCAT GCCGTGCAGCATCAGCGTCACGGCTATTCCCACCTTAAAACGCTTTTTGGGGGAGTCCGCCGGTCTGGTGGCGGAGCGTG CGCGCAGTCTGGCGCAGCGTATTGCTGCACCGGGACAGCAGGGCGTCGCGGATGTCGCTGAATTTATGATGCTGCAATTA CTTAACCGCGCGCAGCCCAAACTGTCGCATCTGGCGCGTCTGGGCACTTTGCACCCTGAACGCCTGCACGAAACGCTGGT TGAACTGTGCGGCGAACTGATGACGTTCACCGATGAATCGCGCCTGCCGCCGGAATTCCCTGCCTACCGCCACGAGCACC AGCAGGCCAGCTTTGAGCCGCTGATGATGGCGCTGCGTCAGGCGCTGAGCACCGTGCTGTCGCCGCGCGCCGTTTCCATC CAACTGAAGAAACAGCCGTATGGCGTGATGGTAGCAATGGTCGGTGATGCGGAATTGATGACCAGCGCCGAGTTTGTGCT GGCGGTACGCGCGCGCATGCCGCAGGAGCACCTGCGTAAACAGCTGTTGCAACAAACGAAGATCGCCTCCAGCGAGAAGA TCCGTGAACTGATCAGCCTGCAACTGCCGGGAATCCCGCTACTGCCGCTGCCGGTGGCACCGCGCCAACTGCCTTATCAC GCAGGTTACAGCTATTTCCAACTGGATAGACAAAGCCCCGCCTGGCAGATGCTGGTGTCCGGCAATACGTTGGCGTTCCA CATTGCTGGTGAATTCCCTGAGCTGGATATGCAGCTTTGGGCGATCCGCGGCCAGTAG Protein sequence : MSSRNRIIWREGLFIKPQHFQQQQRHTDYALHARLSALSDYFYGLQSLAINEEYLNFGRIALVNASGVMPDGTVFNIPGD DALPLPLEITDVALANQKVYLALPLAVNGVSEVGQPGQGIASRLQSHRHDVRDLHSDGGDIVSLEVGKVSLRLMLDRDDR SAYASLAIANILDKRPDGGLILDPNFMPCSISVTAIPTLKRFLGESAGLVAERARSLAQRIAAPGQQGVADVAEFMMLQL LNRAQPKLSHLARLGTLHPERLHETLVELCGELMTFTDESRLPPEFPAYRHEHQQASFEPLMMALRQALSTVLSPRAVSI QLKKQPYGVMVAMVGDAELMTSAEFVLAVRARMPQEHLRKQLLQQTKIASSEKIRELISLQLPGIPLLPLPVAPRQLPYH AGYSYFQLDRQSPAWQMLVSGNTLAFHIAGEFPELDMQLWAIRGQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec25 | YP_851420.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 1e-90 | 47 |
| aec25 | AAQ96719.1 | Aec25 | Not tested | AGI-1 | Protein | 7e-91 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_3248 | YP_003018804.1 | type VI secretion protein | VFG2082 | Protein | 6e-133 | 61 |
| PC1_3248 | YP_003018804.1 | type VI secretion protein | VFG2065 | Protein | 3e-90 | 44 |
