Gene Information

Name : PC1_3172 (PC1_3172)
Accession : YP_003018731.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Unknown
Product : capsid scaffolding
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3588542 - 3589396 bp
Length : 855 bp
Strand : +
Note : PFAM: capsid scaffolding; KEGG: ecm:EcSMS35_4324 phage capsid scaffolding protein GpO

DNA sequence :
ATGGCAAAGAAAGTTTCTAAGTGGTTCCGCGTTGGTGTCGAGGGTGACACCTGCGATGGTCGCGTGATTGACGCGAACGA
TATTCAAAACATGGCGGAGACGTTCGATCCGCGTGTTTATGGTTGCCGCATCAACCTTGAGCACCTGAAAGGCTTACTGC
CTGACAGCCCGTTTCGTCGTTATGGCGATGTGGTCGAGCTGAAATCAGAGGCGATTGATGATGATTCAGCCCTAAAGGGC
AAGCTGGCGCTGTTTGCCAAAATTACTCCGACTGACGAGCTGATCGCCCTGAATAAGGCCTCGCAAAAGGTCTACACCTC
CATGGAAATCCAGCCCAACTTTGCCAACACAGGCAAAGCCTATCTGGTCGGTCTGGCGGTCACCGATGACCCGGCAAGCC
TCGGCACAGAAATGCTGGAATTCAGTGCAAAGGCAAAACTCAACCCACTGGCAACCCGTAAATCTTCCCCGGAAAACCTC
TTTTCTGTCGCCACTGAAGTGACGCTGGAGTTTGAAGACCTGCCGGACGTGGAGCCGACGCTGTTAACCCGCGTGAAAGC
CCTGTTTGGCCGTAAGCAGTCCAGTGATGACGCTCGTTTTAATGATGTGCATGAGGCTGTGGCCGAAGTCGCCGGACAGG
TACAAACCAACGCCGACAGCGTGGAGCAGCGCTTTACCCAGCTTGAGCAGCGCCAGCAGCAGGACATTGCCACGCTAACG
CAGAAGCTGAGCGCCAGTGAGCAGCAGTTAAGCGACCTCAAAGCCACGCTGGACGGCACAGAGAGCTTGTCGCAAAAGCG
CCGCCCCCCGGCAACAGGTGGCGAAGGTGAAGCCACACTGCTGACCAACTGCTAA

Protein sequence :
MAKKVSKWFRVGVEGDTCDGRVIDANDIQNMAETFDPRVYGCRINLEHLKGLLPDSPFRRYGDVVELKSEAIDDDSALKG
KLALFAKITPTDELIALNKASQKVYTSMEIQPNFANTGKAYLVGLAVTDDPASLGTEMLEFSAKAKLNPLATRKSSPENL
FSVATEVTLEFEDLPDVEPTLLTRVKALFGRKQSSDDARFNDVHEAVAEVAGQVQTNADSVEQRFTQLEQRQQQDIATLT
QKLSASEQQLSDLKATLDGTESLSQKRRPPATGGEGEATLLTNC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13465.1 putative capsid scaffold Not tested PAGI-6 Protein 2e-54 48
STY4626 NP_458708.1 putative capsid protein Not tested SPI-7 Protein 5e-56 48
t4320 NP_807915.1 capsid protein Not tested SPI-7 Protein 5e-56 48