Gene Information

Name : PC1_3109 (PC1_3109)
Accession : YP_003018668.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3521097 - 3521957 bp
Length : 861 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3312 iron-hydroxamate transporter ATP-binding subunit

DNA sequence : 
GTGACGGGCGTTGCGATCGCGGCTTACTCCTGTCCTTCAGTGACACTAAAAACCAAAAACGCTATGCAAAATCAAACTGT
ACTGCCTGATACCACCTTCAGACTGGACGACGTCAGTTTTTCCGTCGCCGGGCGCACGCTACTACATCCGCTCTCCATCA
CATTCCCTGTCGGGAAAGTATGCGGTCTGATTGGGCATAACGGCTCAGGTAAATCGACCTTGCTGAAAATACTGGGCCGT
CACCAGCCTGCCAGCAGCGGAACGGCATTGCTGGGAGAACAGGTGATTGGAAGCTGGGACAGCAAGTTGTTCGCCCGTCA
GGTGGCTTATTTACCGCAGCAGCTTCCTGCCGCCGAAGGGATGACCGTGCGTGAACTGGTTGCTGTAGGGCGTTACCCGT
GGCATGGCGCATTAGGCCGTTTCGGTAGTGCCGATCGGGAAAAGGTTGAAGAAGCCATCACGCTGGTAGGACTAAAGCCA
TTCGCGAATCGTCTGGTGGATAGCCTGTCCGGCGGTGAACGGCAGCGAGCCTGGCTGGCGATGACGGTGGCGCAGGATAG
TCGCTGTCTATTACTGGATGAACCGACCTCCGCACTGGATATTGCCCATCAGGTTGAGGTGCTGGCACTGATCCAGCGTA
TGAGCCGCGAGCGTGGTATCACCGTCATTGCGGTGTTGCATGATATCAATATGGCTGCCCGCTACTGCGATCACTTGGTG
GCGCTGCGGGGCGGCAACATGATTGCGCAAGGTGAGCCTGTCGCGCTGATGCAAGGGGACGTGCTGGAAAACATCTACGG
TATTCCCATGGGCATTCTGCCTCATCCGGCTGGTGGCGCACCGGTCAGCTTCGTTTGTTAA

Protein sequence : 
MTGVAIAAYSCPSVTLKTKNAMQNQTVLPDTTFRLDDVSFSVAGRTLLHPLSITFPVGKVCGLIGHNGSGKSTLLKILGR
HQPASSGTALLGEQVIGSWDSKLFARQVAYLPQQLPAAEGMTVRELVAVGRYPWHGALGRFGSADREKVEEAITLVGLKP
FANRLVDSLSGGERQRAWLAMTVAQDSRCLLLDEPTSALDIAHQVEVLALIQRMSRERGITVIAVLHDINMAARYCDHLV
ALRGGNMIAQGEPVALMQGDVLENIYGIPMGILPHPAGGAPVSFVC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-44 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3109 YP_003018668.1 ABC transporter-like protein BAC0164 Protein 8e-45 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_3109 YP_003018668.1 ABC transporter-like protein VFG1042 Protein 8e-45 42
PC1_3109 YP_003018668.1 ABC transporter-like protein VFG0925 Protein 8e-43 41