Gene Information

Name : PC1_2891 (PC1_2891)
Accession : YP_003018453.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3267319 - 3268152 bp
Length : 834 bp
Strand : +
Note : KEGG: eca:ECA2852 hypothetical protein

DNA sequence : 
ATGCAAAGTGAACCCGAGGTTTTGACCGAACACACCGAGCTGATTTGCTCGACCAATATCGAACGTATCGTTACCGGACG
TGATGCTGCGCTGCAACAGATAGAACAGCTCCTCAACCAGCTACAGGCGATCTCAACGTTAACGGCGACTATCGGTGGCG
GCACCGCTGAGGACTGGGGGCTGAAGCAAGGCCATCGCTATGATTGCTGGCTGACAGAAACACCAGGCAAAGCGATGCCA
GTCATTATCCGCACGCTGGATCGCAATATCTGGCGTGACCTGATGCTGAAATCCGGCATGTTGTCGCTGATGGATGCCGA
AGCGCGTAGCCAGTGGCATAAAAATCTGGATGAGGGCGACCTACCGGTCATCAGCGAAGCCAATATCCTCAGCACCTTTG
AGCAACTTCATCAGAGTAAACAAGAGGTATTCGAGCGTGGGATAATCAATGTATTCAAAGGATTGTCCTGGGATTACAAG
ACTAATCACCCTTGCTACTTTGGCAAGAAAATCATCATCAGCTGTCTGGTGAGCTACAATCGTTGGGGCTTTGGCCTGAA
CTGGGGCTGGCGACGCGATCAACTGGCCGATCTGGAACGTATGCTGTATCTGCTGGATGGCAAACCGATTCCCGACAACC
GAGGCGATGTCACCATCCAACTGATGGACCATATCCGCGATAATCCTCACAAGCAGGAATACGAAGATGAGTTCTTTAGT
GTGCGTTACTTTCAGAAAGGCACCGGGCATCTTATCTTTAAGCGTCCCGACCTGATCGATCAGATGAACGACATTATCGC
CAAACATTATCCGGGGATGTTGGCGGCAAGGTAA

Protein sequence : 
MQSEPEVLTEHTELICSTNIERIVTGRDAALQQIEQLLNQLQAISTLTATIGGGTAEDWGLKQGHRYDCWLTETPGKAMP
VIIRTLDRNIWRDLMLKSGMLSLMDAEARSQWHKNLDEGDLPVISEANILSTFEQLHQSKQEVFERGIINVFKGLSWDYK
TNHPCYFGKKIIISCLVSYNRWGFGLNWGWRRDQLADLERMLYLLDGKPIPDNRGDVTIQLMDHIRDNPHKQEYEDEFFS
VRYFQKGTGHLIFKRPDLIDQMNDIIAKHYPGMLAAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec79 AAW51762.1 Aec79 Not tested AGI-3 Protein 8e-78 62
ORF_49 AAZ04463.1 hypothetical protein Not tested PAI I APEC-O1 Protein 6e-77 62
APECO1_3484 YP_854327.1 hypothetical protein Not tested PAI I APEC-O1 Protein 8e-77 62
Z1226 NP_286760.1 hypothetical protein Not tested TAI Protein 3e-78 61
Z1664 NP_287166.1 hypothetical protein Not tested TAI Protein 3e-78 61
z1226 CAD33792.1 Z1226 protein Not tested PAI I 536 Protein 2e-76 61
unnamed AAL57572.1 unknown Not tested LEE Protein 3e-77 61
unnamed CAI43906.1 hypothetical protein Not tested LEE Protein 5e-77 61
unnamed CAE85207.1 hypothetical protein Not tested PAI V 536 Protein 7e-76 59
S3207 NP_838489.1 hypothetical protein Not tested SHI-1 Protein 6e-74 58
SF3002 NP_708776.1 hypothetical protein Not tested SHI-1 Protein 6e-74 58
ECO111_3781 YP_003236116.1 hypothetical protein Not tested LEE Protein 1e-74 58
unnamed AAK00485.1 unknown Not tested SHI-1 Protein 4e-74 58
ECO103_3595 YP_003223452.1 hypothetical protein Not tested LEE Protein 2e-73 58
unnamed CAD66210.1 hypothetical protein Not tested PAI III 536 Protein 1e-66 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2891 YP_003018453.1 hypothetical protein VFG1533 Protein 1e-76 61
PC1_2891 YP_003018453.1 hypothetical protein VFG0666 Protein 2e-74 58
PC1_2891 YP_003018453.1 hypothetical protein VFG1685 Protein 6e-67 55