Gene Information

Name : PC1_2888 (PC1_2888)
Accession : YP_003018450.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 3265965 - 3266438 bp
Length : 474 bp
Strand : +
Note : TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: eca:ECA2855 hypothetical protein

DNA sequence : 
ATGTCATGTAATTCATTGGCAGGCCGCGTTGCGTCCAGAGAGCAGCGCATCATCCAGATGGCGCTGTGCCTGCTGGAAAA
GCGCGTGCGTAAAAATGCGCGACAGTTCAAAACCTCTGAGGACACTAAAAGCTGGTTAATGCTGGAGCTCAGCAACCTGG
AGCGTGAAGTCTTTATGGTGCTGTATCTGGATAACCAACACCGCCTGATAGAAAAAGAAGTTATCGCGCTGGGTGGTATC
AACAGTACTGAAGTGCATCCGCGTGAAATCCTCAAAGCCTCACTACGTCATAACGCCGCCGCCGTGATACTGGCACACAA
TCATCCTTCCGGCTGGGCAGAACCCAGTCAGGCCGATCGCAACATTACTGACAGGCTGAAGGATTCGCTGTCGCAACTTG
ATGTCAAAGTGCTCGACCATCTGGTGGTCGGCAGCACTGAGGTGGTGTCATTCGCTGAACGTGGCTGGCTGTGA

Protein sequence : 
MSCNSLAGRVASREQRIIQMALCLLEKRVRKNARQFKTSEDTKSWLMLELSNLEREVFMVLYLDNQHRLIEKEVIALGGI
NSTEVHPREILKASLRHNAAAVILAHNHPSGWAEPSQADRNITDRLKDSLSQLDVKVLDHLVVGSTEVVSFAERGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-30 57
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-29 56
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-29 56
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 4e-25 55
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-34 51
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 8e-33 50
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 6e-32 50
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 4e-32 50
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-32 50
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 1e-32 50
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 1e-33 50
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-32 50
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-33 50
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-33 50
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 1e-32 50
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 8e-34 50
unnamed AAL08475.1 unknown Not tested SRL Protein 8e-33 50
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 8e-33 50
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-33 50
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-32 50
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 1e-32 50
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 8e-34 50
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-32 49
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 1e-24 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2888 YP_003018450.1 DNA repair protein RadC VFG1119 Protein 3e-30 56
PC1_2888 YP_003018450.1 DNA repair protein RadC VFG1678 Protein 8e-35 51
PC1_2888 YP_003018450.1 DNA repair protein RadC VFG1528 Protein 6e-33 50
PC1_2888 YP_003018450.1 DNA repair protein RadC VFG1617 Protein 2e-32 50
PC1_2888 YP_003018450.1 DNA repair protein RadC VFG1066 Protein 3e-33 50
PC1_2888 YP_003018450.1 DNA repair protein RadC VFG0660 Protein 2e-34 50