Gene Information

Name : PC1_2884 (PC1_2884)
Accession : YP_003018446.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : regulatory protein DeoR
Function : -
COG functional category : K : Transcription
COG ID : COG2378
EC number : -
Position : 3263672 - 3264370 bp
Length : 699 bp
Strand : +
Note : PFAM: regulatory protein DeoR; KEGG: ecl:EcolC_3434 transcriptional regulator

DNA sequence : 
ATGACACAGGCTGACCGCCGATATGACCGGCTGGCCGTCAGGCTGTCATTGATCATCAGCCGATTACTGGCGGGCGAAAC
GCTGAGCGTCAGAAAACTGGCGGCAGAGTTCGGCGTCTCGACCCGTACCTTGCGGCGGGACTTTCGTGAACGGCTGATGT
ATCTCGACCTGGAATACCGTAACGGTCTTTGCCGTTTGCCGGAGCACCATAACCCGGCACGTCATGAGCAGGATGTGTTG
ATGTTTGCCCGCCAGACTGGCGTAGGTGTGTTCTTTCCCGGTCTGGATAACCGGCTGGTAAACACCCTGCTGGACAGCGG
CGAGGACGCACCCTGTCTGGTCTGGCATCCACCCTTGCGTGGTACGCCGACACTGCCGGGGCATTTTTACCGCCTGACTC
GTGCAATTGGTGAGCAGCTACGTGTCACGGTTTTGGCCGACGGTCAGCGCTATGACGGGTTATCACCTTACCGGCTTATC
TGCCTGTACGGCGAATGGTATCTGGTGGCCGAATCTCTGGGGCATCTTCTGGTCCTGCCGCTGCATGAGATTCACGGTGT
GACGGTGTCTACCGAGTCATTCCAGCGCCGCGATGATATCTGCCACCTGACCACGCAATCCGGCTTCATCACGGCATTGC
CGCATTTTCGCTTTATTCACGATGTTCTGACCACTTTCGGCACGTCTCCGACCACATAA

Protein sequence : 
MTQADRRYDRLAVRLSLIISRLLAGETLSVRKLAAEFGVSTRTLRRDFRERLMYLDLEYRNGLCRLPEHHNPARHEQDVL
MFARQTGVGVFFPGLDNRLVNTLLDSGEDAPCLVWHPPLRGTPTLPGHFYRLTRAIGEQLRVTVLADGQRYDGLSPYRLI
CLYGEWYLVAESLGHLLVLPLHEIHGVTVSTESFQRRDDICHLTTQSGFITALPHFRFIHDVLTTFGTSPTT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42094.1 hypothetical protein Not tested PAI II 536 Protein 2e-46 45
yfjR AAZ04453.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 1e-46 45
c5160 NP_757008.1 transcriptional regulator YfjR Not tested PAI II CFT073 Protein 4e-46 45
APECO1_3492 YP_854319.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 1e-46 45
unnamed CAD33782.1 hypothetical protein Not tested PAI I 536 Protein 6e-46 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2884 YP_003018446.1 regulatory protein DeoR VFG1523 Protein 3e-46 45
PC1_2884 YP_003018446.1 regulatory protein DeoR VFG1613 Protein 1e-46 45