Gene Information

Name : PC1_2878 (PC1_2878)
Accession : YP_003018441.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 3258851 - 3259057 bp
Length : 207 bp
Strand : -
Note : PFAM: Prophage CP4-57 regulatory; KEGG: kpe:KPK_4961 transcriptional regulator, AlpA family

DNA sequence :
ATGACTGTTCAACCTTCCCTACTCGAAGACCAGTTTGTCGATATGGCATTCATCACCAAACTGACAGGGCTCACCGACAA
ATGGTTTTATAAGCTGATCAAAGATGGCCTGTTTCCCAAACCCATTAAGCTAGGGCGTAGCTCCCGTTGGCTGCAAAGTG
AAGTGGCAACCTGGTTACAGCAGCGTATCGAAGAATCCCGTAAATAG

Protein sequence :
MTVQPSLLEDQFVDMAFITKLTGLTDKWFYKLIKDGLFPKPIKLGRSSRWLQSEVATWLQQRIEESRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85187.1 hypothetical protein Not tested PAI V 536 Protein 4e-21 78
unnamed CAI43835.1 hypothetical protein Not tested LEE Protein 3e-20 75
unnamed ADD91712.1 putative transcriptional regulator AlpA Not tested PAI-I AL862 Protein 3e-20 75
ECO103_3577 YP_003223438.1 transcriptional regulator Not tested LEE Protein 2e-20 74
rox AAR97599.1 regulator of excision Not tested SHI-1 Protein 2e-20 74
S3190 NP_838473.1 hypothetical protein Not tested SHI-1 Protein 2e-20 74
SF2987 NP_708761.1 hypothetical protein Not tested SHI-1 Protein 2e-20 74
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 6e-18 72
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 8e-18 72
unnamed AAL08466.1 unknown Not tested SRL Protein 2e-20 72
Z1188 NP_286723.1 hypothetical protein Not tested TAI Protein 1e-13 66
Z1627 NP_287131.1 hypothetical protein Not tested TAI Protein 1e-13 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2878 YP_003018441.1 phage transcriptional regulator, AlpA VFG0651 Protein 7e-21 74
PC1_2878 YP_003018441.1 phage transcriptional regulator, AlpA VFG1480 Protein 2e-18 72
PC1_2878 YP_003018441.1 phage transcriptional regulator, AlpA VFG1057 Protein 7e-21 72