|
Name : PC1_0279 (PC1_0279) Accession : YP_003015874.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : KpsF/GutQ family protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.13 Position : 326461 - 327552 bp Length : 1092 bp Strand : - Note : KEGG: eca:ECA0293 D-arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein DNA sequence : ATGTCACAGTTTGAACAAGATGCTCATCTAAAACAGCAGTCTGACCGTGCACTATCCGATCATGCAACACAAGCCGATCA CGCACCACAAGCCGATCATACGCGACAAAAGTCTCATGAACTGCCAGCCGATTTCGACTTCCAGCAGGCGGGTAAGCAGG TAATAAGCATCGAACGCGATGGGCTTGCGCAATTAGATCAGTACATTGATGATAATTTTACCCTCGCCTGTAAAAAGATA TTCGATTGCCAAGGCAAAGTTGTGGTGATGGGAATGGGCAAATCCGGCCACATTGGCTGCAAGATGGCCGCGACTTTCGC CAGTACCGGTACGCCTGCTTTTTTTGTTCACCCAGGCGAAGCCAGCCACGGCGACCTCGGTATGGTAACGCCGCACGATA TCGTGATCGCCATTTCCAACTCTGGCGAGTCCCATGAGATTCTGTCGCTGATTCCCGTCCTGAAACGTCAGAAAGTGTTC CTGATCTGCATGACCAGCGCGCCAGAAAGTACAATGGGTAAAGCGGCGGATATTCACCTGTGCGTGCACGTCCCGCAGGA AGCCTGCCCGCTCGGTCTGGCTCCCACTTCCAGCACGACCGCGACGTTGGTCATGGGAGATGCGCTGGCCGTGGCGTTGC TACAGGCGCGCGGCTTTACCGCCGAAGATTTTGCCCTTTCTCACCCTGGTGGCGCACTCGGCCGCAAACTTTTATTGCGC GTCAGCGATATCATGCACTCAGGCGACGAGATTCCGCATGTTCCACACGATGCTTCACTCCGTGATGCACTGGTGGAAAT TACGCGCAAAAATCTGGGTATGACGGTAATCTGCGAGGCGGATATGAAAATTCAGGGCATCTTTACCGATGGTGACCTGC GCCGCATCTTCGACATGAATATTGACTTGAACAGCGCGCGCATTGCTGATGTGATGACCGCGGGCGGTATCCGGGTCGCA CCGCAAACGCTGGCGGTGGATGCACTTAACCTGATGCAGTCACGCCACATCACCTCAGTGCTGGTGGCAGAAAACGATCG TCTGGTCGGGATCGTCCATATGCACGATATGCTGCGGGCTGGCGTGGTTTAA Protein sequence : MSQFEQDAHLKQQSDRALSDHATQADHAPQADHTRQKSHELPADFDFQQAGKQVISIERDGLAQLDQYIDDNFTLACKKI FDCQGKVVVMGMGKSGHIGCKMAATFASTGTPAFFVHPGEASHGDLGMVTPHDIVIAISNSGESHEILSLIPVLKRQKVF LICMTSAPESTMGKAADIHLCVHVPQEACPLGLAPTSSTTATLVMGDALAVALLQARGFTAEDFALSHPGGALGRKLLLR VSDIMHSGDEIPHVPHDASLRDALVEITRKNLGMTVICEADMKIQGIFTDGDLRRIFDMNIDLNSARIADVMTAGGIRVA PQTLAVDALNLMQSRHITSVLVAENDRLVGIVHMHDMLRAGVV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 1e-51 | 47 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 5e-52 | 47 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 2e-51 | 47 |
