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Name : PC1_2860 (PC1_2860) Accession : YP_003018425.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3232957 - 3234879 bp Length : 1923 bp Strand : - Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: eca:ECA3109 general secretion pathway protein D DNA sequence : ATGGCGTCATCATTGGCGTGGAGCGCCGAATTCTCCGCCAGTTTTAAGGGCACGGATATTCAGGAGTTTATCAATACCGT CAGTAAGAATTTGAATAAGACGGTCATTATCGATCCGTCGGTCAGCGGAACGATCACCGTACGCAGCTATGACATGATGA ACGAAGAACAGTATTACCAGTTCTTCCTGAGCGTGCTGGATGTCTATGGATTTACCGTTATTCCGATGGATAACAACGTC CTGAAAATCATTCGCTCGAAGGATGCGAAATCGACGTCTATGCCGCTGGCGACTGACGATCAGCCGGGCATTGGCGATGA AGTGGTGACGCGCGTCGTGCCAGTGAACAATGTCGCTGCCCGCGATCTGGCGCCGCTGCTGCGCCAGTTGAACGATAACG CTGGCGCCGGGAGCGTGGTGCATTACGAACCGTCGAACGTGCTGCTGATGACCGGCCGCGCGGGGGTGATCAAACGGTTG ATGACGATTGTCGAACGGGTTGATCAGACGGGCGATCGGAATGTGACCAGCATACCGCTGTCTTACGCTTCCTCGACGGA AGTGGTGAAAATGGTGAATGAGCTGAACAAGATGGATGAAAAATCCGCCTTGCCCGGCATGTTGACCGCTAACGTGGTGG CTGACGAACGAACCAACTCGGTGCTGGTGCGCGGAGAACCAAACTCACGCCAGCGCGTTATCGACATGATCAAACAGCTC GATCGCCAGCAGGCGGTACAGGGCAACACCAAAGTTATCTACCTTAAGTACGCGAAAGCGGCCGATCTGGTCGAAGTGCT CACTGGCGTCGGCGACAGTATTCAAACCGACCAGCAAAATGCGCTGCCTGCGCTGCGCAAAGACATTTCGATTAAGGCCC ACGAACAAACTAACTCACTGATTGTGAATGCGGCACCTGACATCATGCGCGACCTGGAACAGGTGATTGCACAGTTGGAT ATCCGCCGTCCGCAGGTACTGGTCGAAGCGATTATCGCGGAAGTACAGGATGCCGATGGAATGAATCTGGGCGTTCAATG GGCGAATAAAAATGCCGGGGTAACGCAATTCACCAATACGGGATTGCCGATTACGACAATGATGGCAGGAGCGGACCAAT TTCGACGTGATGGAACGCTTGGCACGGCAGCGACAACGGCACTTGGCGGTTTCAACGGGATTGCCGCCGGTTTCTATCAG GGTAACTGGGGCATGCTGATGACGGCGCTGTCCAGCAACAGCAAGAACGATATTCTGGCAACGCCCAGTATCGTGACGCT GGATAATATGGAAGCGACGTTTAACGTTGGGCAGGAAGTACCTGTATTGGCAGGTTCGCAGACGACATCCGGCGACAACG TTTTCCAAACGGTGGAACGTAAAACGGTCGGTATCAAACTGAAGGTGAAACCCCAAATCAACGAAGGCGACTCCGTTCTG TTGGAAATCGAACAGGAAGTCTCCAGCGTAGCTGATGCCGCCTCCAGCAGCAGCACCAACCTTGGCGCAACATTCAATAC GCGTACCGTTAATAACGCGGTGCTGGTCAGCAGCGGCGAAACCGTGGTGGTGGGCGGCTTGCTGGATAAAAGTACGAATG AGTCTGCAAGCAAAGTGCCCCTATTGGGCGATATTCCCGTTCTGGGATACTTGTTCCGCTCCAACAGTCAGGAAACGAAA AAGCGTAACCTGATGCTGTTTATCCGACCTTCCATTATTCGCGATCGCAGTCAGTACCAGAGTGCCTCTGCCAGTAAGTA TCATTCGTTCAATGCTGAAGAAGAGAAGCAGCGAGAGGCGAATGGCGGGAAGGCTAATCTGCTGGATAACGATTTACTGC GCTTGCCGGAAGGCGGGAACGCCTATACGTTCCGTCAGGTTCAGTCCTCTATTGTGGCGTTTTATCCGGCGGGCGGGAAA TGA Protein sequence : MASSLAWSAEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVSGTITVRSYDMMNEEQYYQFFLSVLDVYGFTVIPMDNNV LKIIRSKDAKSTSMPLATDDQPGIGDEVVTRVVPVNNVAARDLAPLLRQLNDNAGAGSVVHYEPSNVLLMTGRAGVIKRL MTIVERVDQTGDRNVTSIPLSYASSTEVVKMVNELNKMDEKSALPGMLTANVVADERTNSVLVRGEPNSRQRVIDMIKQL DRQQAVQGNTKVIYLKYAKAADLVEVLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLD IRRPQVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTALGGFNGIAAGFYQ GNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVL LEIEQEVSSVADAASSSSTNLGATFNTRTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSQETK KRNLMLFIRPSIIRDRSQYQSASASKYHSFNAEEEKQREANGGKANLLDNDLLRLPEGGNAYTFRQVQSSIVAFYPAGGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 7e-126 | 45 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-117 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_2860 | YP_003018425.1 | general secretion pathway protein D | VFG2047 | Protein | 3e-116 | 43 |
