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Name : PC1_2859 (PC1_2859) Accession : YP_003018424.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3231464 - 3232960 bp Length : 1497 bp Strand : - Note : KEGG: eca:ECA3108 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase DNA sequence : ATGAGTGACGTTGCCTCCCAGATTATAGAATTACGCCCCATACTGCCTTTTGCCTATGCTCGGTCGCAGCAAATTTTGCT GTTGCAGCGGGAAAATGATACCAGTCTGCGGACGATCTGTGTCGCGCAAACGCCGCCAGCCGCCTTGCTGGAAGCACGTC GGATTGCAGGCTGTTCGCTTAAGATTGAACGGGTTACGGAAGACGAATTTGAGCGGCAATTAGTTATCAGCTATCAGCGT GATTCGGAAGAAGCCCGTCGTCTGATGGAAGACATCGGCAATGAGATGGATTTCTATACGCTGGTGGAAGAGCTACCGGA TAGCGATGATTTGCTTGATGCCGATGATGATGCGCCGATTATCCGCCTGATCAATGCGATGCTGACCGAAGCAATTAAGG ATAAGGCGTCGGATATTCATATCGAAACGTATGAGCGCTATTTGTTGATCCGTTTCCGTGTCGACGGTGTGCTGCGTGAA ATCCTGCGTCCACAGCGTAAGCTGGCGTCGCTGCTGGTATCGCGTATCAAGGTCATGGCCAAGCTGGATATTGCGGAAAA ACGTATCCCGCAGGATGGGCGCATGGCGCTGCGGGTGGGAGGACGAGCGATTGACGTTCGTGTCTCCACGCTGCCGTCGA ACTATGGTGAACGCGTTGTGCTGCGTTTGCTGGATAAAAACAGCGTGAAGCTCGATCTTGAACTGCTGGGCATGTCGGAG CGCAACCGGCAGCAACTGGACAGCCTGATCCATCGTCCACATGGCATTATTCTTGTCACCGGTCCGACAGGGTCGGGGAA AAGTACCACGCTGTACGCTGCGCTCAGCCGCTTGAATGCCTCGGAACGTAACATCATGACGGTGGAAGATCCCATTGAGT ATGAGCTGGAAGGCATTGGGCAAACCCAGGTCAATACCAAGGTGGATATGACGTTTGCCCGCGGACTGCGTGCCATTCTG CGTCAGGACCCAGACGTTGTGCTGGTAGGGGAAATTCGTGATGGTGAAACGGCGCAGATTGCCGTACAGGCATCGCTGAC CGGTCACCTTGTGTTATCCACACTGCATACCAATAGCGCGCTGGGCGCGCTGTCTCGTTTACAGGATATGGGCGTCGAGC CTTTCCTGCTGTCAACCTCTTTGCTGGGTGTGCTTGCACAGCGTCTTGTCAGAACACTGTGTTCTGAGTGTAGCCAGCCG CATCCGGTTGATCCGGTTCAGGCCGAACAAATGGGGATCGCACCGGGTACGCTGCTGCATAACCCGGTGGGTTGCCCGCA GTGTAGCTATACCGGCTATCGGGGACGTATCGGCATTCATGAACTGGTACTGATCAATGACGACGTTCGCGCCGCGATCC ACCGCAGCGACGGTGAAATGGCGATTGCGCAGATTCTGGGCACAAGTCGAACGACAATTCGTCAGGACGGGCTGGAAAAG GTACTGGCGGGGTTCACGACCTGGGAAGAAGTGATCCGCGTAACCAAAGAGGAATGA Protein sequence : MSDVASQIIELRPILPFAYARSQQILLLQRENDTSLRTICVAQTPPAALLEARRIAGCSLKIERVTEDEFERQLVISYQR DSEEARRLMEDIGNEMDFYTLVEELPDSDDLLDADDDAPIIRLINAMLTEAIKDKASDIHIETYERYLLIRFRVDGVLRE ILRPQRKLASLLVSRIKVMAKLDIAEKRIPQDGRMALRVGGRAIDVRVSTLPSNYGERVVLRLLDKNSVKLDLELLGMSE RNRQQLDSLIHRPHGIILVTGPTGSGKSTTLYAALSRLNASERNIMTVEDPIEYELEGIGQTQVNTKVDMTFARGLRAIL RQDPDVVLVGEIRDGETAQIAVQASLTGHLVLSTLHTNSALGALSRLQDMGVEPFLLSTSLLGVLAQRLVRTLCSECSQP HPVDPVQAEQMGIAPGTLLHNPVGCPQCSYTGYRGRIGIHELVLINDDVRAAIHRSDGEMAIAQILGTSRTTIRQDGLEK VLAGFTTWEEVIRVTKEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-134 | 63 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-135 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_2859 | YP_003018424.1 | general secretory pathway protein E | VFG2048 | Protein | 4e-135 | 62 |
| PC1_2859 | YP_003018424.1 | general secretory pathway protein E | VFG0182 | Protein | 6e-135 | 62 |
| PC1_2859 | YP_003018424.1 | general secretory pathway protein E | VFG1876 | Protein | 2e-124 | 56 |
| PC1_2859 | YP_003018424.1 | general secretory pathway protein E | VFG2426 | Protein | 9e-72 | 46 |
