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Name : PC1_2858 (PC1_2858) Accession : YP_003018423.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 3230236 - 3231462 bp Length : 1227 bp Strand : - Note : TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: eca:ECA3107 general secretion pathway protein F DNA sequence : ATGGCACAGTACCACTATCAGGCGCTGGATGCGCAAGGGAAAAAATGCCGTGGCACTCAGGAAGCGGACTCTGCCAGACA GGCGCGTCAGCTATTGCGGGAGCGCGGACTGGTGCCGCTGTCGGTTGATGAAGGTCGCGGTGACCAGCAGAAAGCCGGTT CTACGGGGTTTTCCCTACGCCGCAAAATTCGTATCAGTACCTCAGATTTGGCTCTGTTGACTCGCCAGTTGGCGACGCTG GTGGCGGCGTCATTGCCGCTGGAAGAAGCGCTGGATGCGGTGGCGAAACAGAGCGAAAAGCCGCATCTGAGCCAGTTGAT GGCGGCAGTGCGCAGCAAGGTTATGGAAGGGCATTCGCTGGCCGATGCGATGAAATGTTTTCCCAGCAGCTTTGAGCGAC TGTATTGCGCGATGGTGGCCGCAGGCGAGACCTCCGGCCACCTTGATGAAGTGCTTAACCGACTGGCGGACTACACCGAG CAGCGCCAGCAGATGCGTAGCCGCATCCAGCAGGCGATGATCTATCCGTGCGTGCTTACCGTCGTTGCGATTGCCGTGGT CAGCATTTTGCTATCCGTTGTGGTACCAAAAGTCGTCGAGCAATTTATTCATATGAAGCAGGCGCTGCCGCTTTCAACCC GTGTGTTGATGGGAATAAGCGATGCCGTGCGCACATTCGGGCCATGGGTGGTGCTGGCGCTGTTGGCCGCGTTCATGGCG CTACGCGTGATGCTGCGACAGGAAAAACGGCGTATCAATTTCCATCGGCGTTTGCTGTATTTGCCACTGCTTGGCCGTAT TGCTCGCGGTCTGAATACGGCACGCTACGCGCGGACGCTCAGTATTCTCAACGCCAGTGCCGTGCCGCTGTTGCAGGCGA TGCGCATTAGCGGCGATGTGATGAGTAATGACTATGCCCGCCATCGGCTCTCTCTGGCGACGGATGCGGTACGAGAAGGC GTCAGTCTGCATAAAGCGCTGGAACAGACGGCGCTCTTTCCCCCGATGATGCGTCATATGATCGCCAGCGGTGAACGCAG TGGCGAGTTGGACAGCATGCTGGAACGGGCGGCGGATAATCAGGATCGGGAATTCAGTTCGCAGATGACGCTGGCGCTGG GGTTATTTGAACCTCTGCTGGTGGTCAGCATGGCGGCGGTGGTGCTGTTTATCGTACTGGCGATTTTACAGCCGATTCTG CAACTGAATACGTTAATGAGTTCGTAA Protein sequence : MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDEGRGDQQKAGSTGFSLRRKIRISTSDLALLTRQLATL VAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPSSFERLYCAMVAAGETSGHLDEVLNRLADYTE QRQQMRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGISDAVRTFGPWVVLALLAAFMA LRVMLRQEKRRINFHRRLLYLPLLGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARHRLSLATDAVREG VSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPIL QLNTLMSS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 1e-87 | 55 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-87 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_2858 | YP_003018423.1 | general secretion pathway protein F | VFG2049 | Protein | 6e-83 | 54 |
| PC1_2858 | YP_003018423.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-80 | 52 |
| PC1_2858 | YP_003018423.1 | general secretion pathway protein F | VFG1870 | Protein | 2e-67 | 43 |
