Gene Information

Name : PC1_2855 (PC1_2855)
Accession : YP_003018420.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : general secretion pathway protein I
Function : -
COG functional category : N : Cell motility
COG ID : COG2165
EC number : -
Position : 3228702 - 3229067 bp
Length : 366 bp
Strand : -
Note : TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: eca:ECA3104 general secretion pathway protein I

DNA sequence : 
ATGAAACGACAGAAAGGGATGACGCTGGTGGAGGTGCTGGTCGCACTGAGCGTTTTTGCGCTGGCGGGGATCGCCGTTTT
GCAAACGACAGCCAGACAGGCAAGCAGCCTTAGCAGACTGGAAGAGAAGACGTTTGCAGGCTGGGTAGCAGAAAACCAGC
AGGTTCAACTGCGGCTGGAACAGCGCTGGCCGGAAGCATCGTGGGTGAGGGGCGAAACACAGTTCGCGGGCATGCGCTGG
CATTGGCGCTGGCAGGGGGTAGAGACGGGTGACCCTCAGACCAAAGCGCTGGATGTAGAGGTGCGGCGTAATAAAGACGC
CTTTGCCGCCGATGCTTCGCTGCGTACCTATGTGGTGAAGCAATAA

Protein sequence : 
MKRQKGMTLVEVLVALSVFALAGIAVLQTTARQASSLSRLEEKTFAGWVAENQQVQLRLEQRWPEASWVRGETQFAGMRW
HWRWQGVETGDPQTKALDVEVRRNKDAFAADASLRTYVVKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspI CAE85229.1 GspI, hypothetical type II secretion protein Not tested PAI V 536 Protein 4e-09 48
gspI YP_854402.1 type II secretion protein GspI Not tested PAI I APEC-O1 Protein 5e-07 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2855 YP_003018420.1 general secretion pathway protein I VFG2052 Protein 5e-10 47
PC1_2855 YP_003018420.1 general secretion pathway protein I VFG0178 Protein 2e-17 47