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Name : PC1_2828 (PC1_2828) Accession : YP_003018394.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 3204199 - 3205389 bp Length : 1191 bp Strand : + Note : PFAM: integrase family protein; KEGG: seh:SeHA_C2638 integrase DNA sequence : ATGCTGCTAACCGATCTCAAAATCAAGAAGGCGAAAGCCCAAGACAAACCCTACACACTCAATGACGGCAACGGCTTATC TTTGCTGATTGATCCTAAAGGCACAAAGGGCTGGCGCTTCCGCTATCAGTTTGCCAATAAGCCTAAACTTATATCGTTTG GCACTTACGATACTGTATCCCTTGCCGATGCCCGTAAGAAGCGCGATGAAGCCCGATCCATGTTGGCTAATGGCATTAAC CCCAGCGACGCCCGCAGAGCCGATAAGCTATCTTTATTGTTCTCTACGGAAAACACCTTTGAAGCAGTGGCGAGAGAATG GCACACATCAAAACTCACTACCTGGTCGGAAGGGTACGCCAAAGAAGTTATACACTATCTGGAAAAAGAAATTTTCCCGT TCCTGGGTAAGCGCCCGATAGACCAGATCACGCCGCTTGAACTCTTAGCCGTTCTGCAAAAGATCGAAAAACGCGGGGCA TTAGAGCAAGCCAGCAAAATCCGCCGCCGCTGCGGTGAAGTATTCCGTTATGCGGTTGTCACGGGACGCGCTATGTATAA TCCAGCGCCCGACCTCGACCTAGCCAGCGCCATGAACAAGCCAAAGAACAATCACTTTCCGTTCCTCACCGAAAGTGAAC TACCCGATTTTGTTCAGGCGCTCAATAATTACAAAGGAAGCCAAATCACCAAATACGCCACTCAGCTTTTAATGTTGACC GGTGTTAGAACCATTGAATTACGCGCGGCTGAATGGGTTGAATTCGATTTAGATAATGCACTGTGGGAAATACCTAAAGA ACGGATGAAGAAGCGCCGCCCGCATTTGGTGCCACTATCCACGCAGGCGGTTACCATTCTGAAAGAACTGAAAGTGCTTA CTGGCTATTACCAGCTTGTCTTTCCTGGCCGAAATGACACAAGAAAGCCGATGAGCGATGCCGCGATTAATAAAGTGATC AAGATGCTGGGTTATCACGGCAGGCTTACCGGTCACGGCTTCAGACACACCATGAGTACCATATTGCATGAGCACGGATT TAACAGCGCATGGATTGAAACCCAGCTTGCGCATGTTGATAAAAATTCCATCCGTGGAACTTATAACCATGCGCAATACT TAGAAGGACGTAGGGAAATGTTACAGTGGTATGGAGAATTCACGAGTGAAGGTAGTAAAAAAAATGCGTAA Protein sequence : MLLTDLKIKKAKAQDKPYTLNDGNGLSLLIDPKGTKGWRFRYQFANKPKLISFGTYDTVSLADARKKRDEARSMLANGIN PSDARRADKLSLLFSTENTFEAVAREWHTSKLTTWSEGYAKEVIHYLEKEIFPFLGKRPIDQITPLELLAVLQKIEKRGA LEQASKIRRRCGEVFRYAVVTGRAMYNPAPDLDLASAMNKPKNNHFPFLTESELPDFVQALNNYKGSQITKYATQLLMLT GVRTIELRAAEWVEFDLDNALWEIPKERMKKRRPHLVPLSTQAVTILKELKVLTGYYQLVFPGRNDTRKPMSDAAINKVI KMLGYHGRLTGHGFRHTMSTILHEHGFNSAWIETQLAHVDKNSIRGTYNHAQYLEGRREMLQWYGEFTSEGSKKNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 1e-120 | 62 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 6e-124 | 62 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 6e-124 | 62 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 8e-124 | 62 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 8e-124 | 62 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 2e-123 | 61 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 9e-124 | 61 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 2e-121 | 60 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 3e-121 | 60 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 3e-121 | 60 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 2e-121 | 60 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 2e-115 | 56 |
| c3556 | NP_755431.1 | prophage P4 integrase | Not tested | PAI I CFT073 | Protein | 4e-75 | 42 |
| BJAB0715_01002 | YP_008216150.1 | Integrase | Not tested | AbaR27 | Protein | 6e-66 | 42 |
| c5216 | NP_757064.1 | prophage P4 integrase | Not tested | PAI II CFT073 | Protein | 4e-75 | 41 |
| ORF_1 | AAZ04412.1 | phage integrase | Not tested | PAI I APEC-O1 | Protein | 4e-75 | 41 |
| ECO111_3718 | YP_003236059.1 | putative integrase | Not tested | LEE | Protein | 6e-73 | 41 |
| APECO1_3534 | YP_854214.1 | P4-like integrase | Not tested | PAI I APEC-O1 | Protein | 5e-75 | 41 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 8e-75 | 41 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 7e-75 | 41 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 5e-75 | 41 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 5e-75 | 41 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 1e-73 | 41 |
| int | AAN62223.1 | putative integrase | Not tested | PAGI-3(SG) | Protein | 2e-63 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_2828 | YP_003018394.1 | integrase family protein | VFG0783 | Protein | 3e-124 | 62 |
| PC1_2828 | YP_003018394.1 | integrase family protein | VFG0598 | Protein | 1e-121 | 60 |
| PC1_2828 | YP_003018394.1 | integrase family protein | VFG1693 | Protein | 2e-75 | 42 |
