Gene Information

Name : PC1_2828 (PC1_2828)
Accession : YP_003018394.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3204199 - 3205389 bp
Length : 1191 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: seh:SeHA_C2638 integrase

DNA sequence :
ATGCTGCTAACCGATCTCAAAATCAAGAAGGCGAAAGCCCAAGACAAACCCTACACACTCAATGACGGCAACGGCTTATC
TTTGCTGATTGATCCTAAAGGCACAAAGGGCTGGCGCTTCCGCTATCAGTTTGCCAATAAGCCTAAACTTATATCGTTTG
GCACTTACGATACTGTATCCCTTGCCGATGCCCGTAAGAAGCGCGATGAAGCCCGATCCATGTTGGCTAATGGCATTAAC
CCCAGCGACGCCCGCAGAGCCGATAAGCTATCTTTATTGTTCTCTACGGAAAACACCTTTGAAGCAGTGGCGAGAGAATG
GCACACATCAAAACTCACTACCTGGTCGGAAGGGTACGCCAAAGAAGTTATACACTATCTGGAAAAAGAAATTTTCCCGT
TCCTGGGTAAGCGCCCGATAGACCAGATCACGCCGCTTGAACTCTTAGCCGTTCTGCAAAAGATCGAAAAACGCGGGGCA
TTAGAGCAAGCCAGCAAAATCCGCCGCCGCTGCGGTGAAGTATTCCGTTATGCGGTTGTCACGGGACGCGCTATGTATAA
TCCAGCGCCCGACCTCGACCTAGCCAGCGCCATGAACAAGCCAAAGAACAATCACTTTCCGTTCCTCACCGAAAGTGAAC
TACCCGATTTTGTTCAGGCGCTCAATAATTACAAAGGAAGCCAAATCACCAAATACGCCACTCAGCTTTTAATGTTGACC
GGTGTTAGAACCATTGAATTACGCGCGGCTGAATGGGTTGAATTCGATTTAGATAATGCACTGTGGGAAATACCTAAAGA
ACGGATGAAGAAGCGCCGCCCGCATTTGGTGCCACTATCCACGCAGGCGGTTACCATTCTGAAAGAACTGAAAGTGCTTA
CTGGCTATTACCAGCTTGTCTTTCCTGGCCGAAATGACACAAGAAAGCCGATGAGCGATGCCGCGATTAATAAAGTGATC
AAGATGCTGGGTTATCACGGCAGGCTTACCGGTCACGGCTTCAGACACACCATGAGTACCATATTGCATGAGCACGGATT
TAACAGCGCATGGATTGAAACCCAGCTTGCGCATGTTGATAAAAATTCCATCCGTGGAACTTATAACCATGCGCAATACT
TAGAAGGACGTAGGGAAATGTTACAGTGGTATGGAGAATTCACGAGTGAAGGTAGTAAAAAAAATGCGTAA

Protein sequence :
MLLTDLKIKKAKAQDKPYTLNDGNGLSLLIDPKGTKGWRFRYQFANKPKLISFGTYDTVSLADARKKRDEARSMLANGIN
PSDARRADKLSLLFSTENTFEAVAREWHTSKLTTWSEGYAKEVIHYLEKEIFPFLGKRPIDQITPLELLAVLQKIEKRGA
LEQASKIRRRCGEVFRYAVVTGRAMYNPAPDLDLASAMNKPKNNHFPFLTESELPDFVQALNNYKGSQITKYATQLLMLT
GVRTIELRAAEWVEFDLDNALWEIPKERMKKRRPHLVPLSTQAVTILKELKVLTGYYQLVFPGRNDTRKPMSDAAINKVI
KMLGYHGRLTGHGFRHTMSTILHEHGFNSAWIETQLAHVDKNSIRGTYNHAQYLEGRREMLQWYGEFTSEGSKKNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-120 62
int AAC31482.1 CP4-like integrase Not tested LEE Protein 6e-124 62
int ACU09430.1 integrase Not tested LEE Protein 6e-124 62
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 8e-124 62
ECs4534 NP_312561.1 integrase Not tested LEE Protein 8e-124 62
int CAC39282.1 integrase Not tested LPA Protein 2e-123 61
aec33 AAW51716.1 Int Not tested AGI-3 Protein 9e-124 61
int AAD44730.1 Int Not tested SHI-2 Protein 2e-121 60
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-121 60
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-121 60
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-121 60
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-115 56
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-75 42
BJAB0715_01002 YP_008216150.1 Integrase Not tested AbaR27 Protein 6e-66 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-75 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-75 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-75 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-73 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 8e-75 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 7e-75 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 5e-75 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 5e-75 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-73 41
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 2e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2828 YP_003018394.1 integrase family protein VFG0783 Protein 3e-124 62
PC1_2828 YP_003018394.1 integrase family protein VFG0598 Protein 1e-121 60
PC1_2828 YP_003018394.1 integrase family protein VFG1693 Protein 2e-75 42