Gene Information

Name : PC1_2669 (PC1_2669)
Accession : YP_003018235.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : LuxR family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 3025559 - 3026215 bp
Length : 657 bp
Strand : -
Note : PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: eca:ECA2882 response regulator

DNA sequence : 
TTGATTAGCGTTTTTCTTGTTGATGACCATGAACTGGTGCGGGCAGGGATACGACGCATTCTTGACGATATCAAAGGTCT
GAAAGTGGTTGGTGAGGCATGCTGTGGTGAAGATGCCGTGAAATGGTGCCGAAGCAATGATGTGGATGTTGTCCTGATGG
ACATGAGCATGCCGGGCATCGGCGGGCTTGAAGCAACGCGTAAGATTCTGCGTTTTACTCCAGATATAAAAGTCATCATG
CTCACTATTTATACGGAGAATCCTCTGCCCGCAAAAGTGATGCAAGCCGGAGCTGCGGGATATGTGAGTAAAGCGGCTGC
CCCTCAGGAAGTGATCTCAGCCATTCGAGCAGTGCATGCCGGTAAGCGGTATATTGCTTCTGATATCGCCCAACAGATGG
CATTAAGCCAGTTGGAGCCGCAGACGGACGCGCCGCTGGAGTGTTTGTCTGAACGCGAATTACAGATTATGCTAATGATA
ACGAAAGGGCAGAAAGTGACTGAAATCTCAGATCAGCTTAATCTCAGCCCTAAAACAGTGAACAGCTATCGTTACCGTAT
GTTTAGCAAGTTGAATATCAACGGCGACGTAGAGTTGACTCATCTGGCTATCAAGCATGGGCTTTTTACCGCGGAGACAT
TGTTAAGTAGTGAGTGA

Protein sequence : 
MISVFLVDDHELVRAGIRRILDDIKGLKVVGEACCGEDAVKWCRSNDVDVVLMDMSMPGIGGLEATRKILRFTPDIKVIM
LTIYTENPLPAKVMQAGAAGYVSKAAAPQEVISAIRAVHAGKRYIASDIAQQMALSQLEPQTDAPLECLSERELQIMLMI
TKGQKVTEISDQLNLSPKTVNSYRYRMFSKLNINGDVELTHLAIKHGLFTAETLLSSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 2e-40 47
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 2e-40 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2669 YP_003018235.1 LuxR family two component transcriptional regulator VFG1889 Protein 3e-47 50