Gene Information

Name : PC1_2585 (PC1_2585)
Accession : YP_003018152.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2952980 - 2953756 bp
Length : 777 bp
Strand : +
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: eca:ECA1716 flagellar biosynthesis protein FliP

DNA sequence : 
ATGAGTGCCTTGCCTAATTATTTTCGTATCACCGCTTTGTTACGCACGCTACGCTATGGTTTAGCCATCAGCTTATTGCT
TCTGGCTCCATCGGTGTGGGCCCAGCTTCCTGGAATTGTGACTCAACCGCTACCTAACGGTGGACAGAGCTGGACGCTAT
CAGTACAAACGCTGGTTTTCCTCACGTCATTAACGTTTATTCCTGCCGCATTGTTAATGATGACCAGCTTCACCCGGATC
ATCATTGTACTGAGCTTGTTACGCAACGCGCTGGGTACGCCAACCGCACCACCGAACCAGGTCTTGTTAGGGTTGACGCT
TTTCCTGACGTTTTTTGTTATGTCGCCAGTATTAAACCGCGTTTATGAAGAAGCCTACCTTCCCTTCAGCCAAGATCAAA
TCAGTATGGAGGTCGCCATCGAACGCGGGGCAGAGCCTGTGCGTGAATTCATGCTGCGGCAAACCCGGGAAACCGATCTG
GCGTTGTTTACTCGGTTGGCTGAAATTCCTGAAATTCAGGGGCCTGAAGCGGTTCCCATGCGTGTGCTTCTCCCTGCATT
TGTGACAAGTGAACTAAAAACCGCTTTCCAGATTGGCTTTACTATATTTATCCCTTTCCTGATCATTGACCTCGTTGTTG
CCAGCGTATTGATGGCACTAGGGATGATGATGGTTCCTCCGGCAACCATTTCCTTGCCTTTCAAGCTCATGCTTTTTGTA
TTAGTCGATGGCTGGCAGTTGCTACTCGGTTCATTAGCCCAAAGTTTTTATAGTTAG

Protein sequence : 
MSALPNYFRITALLRTLRYGLAISLLLLAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFIPAALLMMTSFTRI
IIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISMEVAIERGAEPVREFMLRQTRETDL
ALFTRLAEIPEIQGPEAVPMRVLLPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFV
LVDGWQLLLGSLAQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-23 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-23 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-23 46
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-25 45
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 9e-19 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 9e-19 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-19 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-19 44
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-26 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-28 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-27 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-26 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-28 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-28 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-28 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 9e-19 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-20 41
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-27 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2585 YP_003018152.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-85 83
PC1_2585 YP_003018152.1 flagellar biosynthetic protein FliP VFG2494 Protein 8e-70 70
PC1_2585 YP_003018152.1 flagellar biosynthetic protein FliP VFG2016 Protein 4e-53 57
PC1_2585 YP_003018152.1 flagellar biosynthetic protein FliP VFG1259 Protein 7e-56 57
PC1_2585 YP_003018152.1 flagellar biosynthetic protein FliP VFG0188 Protein 1e-27 44
PC1_2585 YP_003018152.1 flagellar biosynthetic protein FliP VFG0044 Protein 6e-28 42
PC1_2585 YP_003018152.1 flagellar biosynthetic protein FliP VFG0394 Protein 1e-25 41