Gene Information

Name : PC1_2461 (PC1_2461)
Accession : YP_003018028.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : transport system permease protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 2826339 - 2827343 bp
Length : 1005 bp
Strand : +
Note : PFAM: transport system permease protein; KEGG: eca:ECA1844 hemin transport system permease protein

DNA sequence : 
ATGACGTCACGGTTTCACCCGCGCACGTGGTTGCTCGCACTGCTGTTACTGATGGTGGCACTGATGGTCGGTGCCGCCAA
CATGGGCGCGCTGACCCTCTCGCTCAAAATGTTATGGCAAACGCCGCTTGACGATCCGATCTGGCATATCTGGTTGAATA
TCCGCGTTCCTCGCGTACTGCTGGCGATACTCGTCGGCGGCGCACTGGCCTGTTCTGGCGCAATTATGCAGGGATTATTT
CGTAATCCGCTTGCCGATCCCGGCCTGCTTGGCATCAGCAGCGGTGCCGCACTCTGCGTGGCGCTGACTATCGTACTACC
GCTTGGTCTTCCCCCACTGCTGGCACTTTACAGTCCGATGTTTGCCGCCTTTGCGGGGAGTCTGGCGGTTACCGCCATCA
TTTTCATCCTCAGCCGTTCCGAACAAGGTGGATTAACGCGACTGCTGTTGGCAGGCATCGCGCTCAATGCGCTGTGTATC
GCGCTGATCGGTGTCCTGACCTACATCAGCACCGACCAACAGTTGCGCCAGTTTTCACTCTGGGGCATGGGGAGTCTCGG
GCAGGCCCAGTGGCCGATGTTGCTGGTTGCCAGTACGCTGACCATCCCCGCCATGATCGTGACGCTGTATTACGCACGCC
GTTTGAACCTGCTTCAACTCGGGGATGAAGAAGCGCACTACCTCGGTGTCAACGTGAGGCGTACCAAGCATATTCTTCTG
TTGCTCAGCTCGCTGTTGGTAGGTGTCGCAGTGGCGGTGAGCGGTGTGATCGGGTTTGTCGGGCTTATCATTCCACATCT
GATACGTTTGCATCTGGGTGCCGATCATCGCTGGCTCCTTCCCGGTTCTATTCTCGGCGGTGCCTGTCTGCTCCTGTTTG
CCGACACGCTGGCACGCACGCTGCTTGCGCCAGCAGAAATGCCCGTAGGGCTGTTGAGCAGCCTGATTGGCGGGCCGTAT
TTCTTATGGCTGATCGTTCAGCATAAAGGACGTGGCAATGACTGA

Protein sequence : 
MTSRFHPRTWLLALLLLMVALMVGAANMGALTLSLKMLWQTPLDDPIWHIWLNIRVPRVLLAILVGGALACSGAIMQGLF
RNPLADPGLLGISSGAALCVALTIVLPLGLPPLLALYSPMFAAFAGSLAVTAIIFILSRSEQGGLTRLLLAGIALNALCI
ALIGVLTYISTDQQLRQFSLWGMGSLGQAQWPMLLVASTLTIPAMIVTLYYARRLNLLQLGDEEAHYLGVNVRRTKHILL
LLSSLLVGVAVAVSGVIGFVGLIIPHLIRLHLGADHRWLLPGSILGGACLLLFADTLARTLLAPAEMPVGLLSSLIGGPY
FLWLIVQHKGRGND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecC AAL08453.1 FecC Virulence SRL Protein 1e-17 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2461 YP_003018028.1 transport system permease protein VFG0922 Protein 8e-69 65
PC1_2461 YP_003018028.1 transport system permease protein VFG1044 Protein 6e-18 41
PC1_2461 YP_003018028.1 transport system permease protein VFG0926 Protein 1e-18 41