Gene Information

Name : PC1_2282 (PC1_2282)
Accession : YP_003017856.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : Pili assembly chaperone, N-terminal
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 2624212 - 2624916 bp
Length : 705 bp
Strand : -
Note : PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: cko:CKO_02626 hypothetical protein

DNA sequence : 
GTGCAGAACTCATCTCTCTTATTTCAATCTTTCACCTTCGGTCTGGTGCTTTTTGCTTTATTGACGGTTCATCAGGCACA
GGCGGGGGGGATTGCGCTGGGCGCTACGCGGGTGATCTACTCCGCAGAGGCCAATCAGGCTTCACTTTCGATTATTAACA
GTGATGAAAATAACCGCTTTTTGATTCAATCCTGGGTAGAAGATAAAGACGGGAATAAAACCAAAGATTTTCTGGCGACC
CCTCCGCTTTTTGTGGTGAAACCCAAAGGTGAGAACACATTGCGACTGATGTATGTCGGTACACCTTTGCCTACCGATCG
CGAATCCGTTTATTGGGTCAATGTCAAAGCGATTCCGGCGGTTGAGAAACGATCGCTGGAGGATAAAAACGCGCTGCAAT
TGGCGGTGTTATCTCGCATTAAACTTTTTGTCAGACCCGCTAATCTTCCCACGGGGGCCGATAGCGCACCCGCGACGCTA
CGTTTCCAGCAGTCAGGCTCGGCGCTCACGATCACCAACCCCTCTCCTTATTTTATTACGCTGGTCAACCTCCAGTCTGG
CAGCCAGAAACTTCCCAACACGATGGTGCCGCCAAAAGGTTCGACATCACTGACGCTGTCTGGGGGAGCACCCGGTGCGG
TGAGTTTCCAGACCATTAACGATTACGGAGCCATGACGCCACGCGTCACAGGTAAAGGGCTATGA

Protein sequence : 
MQNSSLLFQSFTFGLVLFALLTVHQAQAGGIALGATRVIYSAEANQASLSIINSDENNRFLIQSWVEDKDGNKTKDFLAT
PPLFVVKPKGENTLRLMYVGTPLPTDRESVYWVNVKAIPAVEKRSLEDKNALQLAVLSRIKLFVRPANLPTGADSAPATL
RFQQSGSALTITNPSPYFITLVNLQSGSQKLPNTMVPPKGSTSLTLSGGAPGAVSFQTINDYGAMTPRVTGKGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-50 50
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 1e-45 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2282 YP_003017856.1 Pili assembly chaperone, N-terminal VFG0445 Protein 3e-64 56
PC1_2282 YP_003017856.1 Pili assembly chaperone, N-terminal VFG0875 Protein 2e-54 48
PC1_2282 YP_003017856.1 Pili assembly chaperone, N-terminal VFG0911 Protein 4e-46 47
PC1_2282 YP_003017856.1 Pili assembly chaperone, N-terminal VFG1644 Protein 6e-46 47
PC1_2282 YP_003017856.1 Pili assembly chaperone, N-terminal VFG0455 Protein 3e-37 42