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Name : PC1_2215 (PC1_2215) Accession : YP_003017790.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : YscU/HrpY family type III secretion protein Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 2544311 - 2545390 bp Length : 1080 bp Strand : + Note : TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; KEGG: eca:ECA2076 type III secretion protein DNA sequence : ATGAGCGAGAAAACGGAACAGCCCACAGATAAAAAGCTGGAAGACGCACGCCGTAAAGGAGAAGTAGGACAAAGTCAGGA TGTGCCCAAGCTGCTGATCTGCGTCGGTCTACTGGAGTGCGTGTTGGCATTAGCGGACAGCACAATGGGGAAACTCCAGA CGCTGGTGCAACTGCCGCTACAACGGCTGGATGCGCCGTTTGCGCAGGTGGCGAAAGAAGTCTTTCATGACGCCGCCGTG CTGGCAGGCACACTCTGCCTGTTAGCCGCCGCGATTGCCGTCTTGCTGCGCATTGTGGGCGGCTGGATCCAATATGGCCC GCTGTTTGCGCCCGAAGCGCTGAAGCTCGATCTCAATCGACTGAACCCGATTAACCAGTTTAAGCAGATGTTTTCGATGC GTAAGCTGGTGGAAATGCTGACCAATATCCTGAAAGCCGTAGTGATCGGTACGGTCTTTTATAAAGTGGTGGTGCCGGAG TTGGAAGCGCTGGTCGAATTGGCCTACGGCGATCTCCACGGTTTCTGGCAAGGGGTTAAAGCGCTGCTGACGCGCATTGC CCGCACCACGCTGACGGCGCTCTTAGTGCTATCTGCACTGGATTTCGGTCTGCAAAAGTATTTCTTTCTCAAGCAGCAGC GTATGAGCCATGAGGATTTACGCAACGAGCACAAGGATTCCGAAGGCGATCCCCACATGAAAGGCCATCGTAAGTCGCTG GCGCACGAACTGATGAACGAACCCGCCGCCCCGCGCCCCAAAGCCAAAGTCGAAGACGCCGATATGCTGCTGGTGAACCC AACGCACTATGCGGTGGGACTTTACTATCGTCCCGGCAAAACGCCATTACCGCGCATCTTGTTTAAAGGGGAAGATAGTG CGGCGCAGGAGCTCATCGCTCAGGCGAAAAAAGCAGACATTCCGGTGATTCGCTTCATCTGGCTGACCCGTACGCTGTAT CGCACCACGCCGGAAGGCCAGTACATTCCGCGCGAAACGCTTCAGGCCGTAGCGCAGGTGTATCGCGTCCTGCGCCAGCT CGAAGACGAGCAAAAACGCGATATTATCGAGATGGAGTGA Protein sequence : MSEKTEQPTDKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQRLDAPFAQVAKEVFHDAAV LAGTLCLLAAAIAVLLRIVGGWIQYGPLFAPEALKLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPE LEALVELAYGDLHGFWQGVKALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKSL AHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGEDSAAQELIAQAKKADIPVIRFIWLTRTLY RTTPEGQYIPRETLQAVAQVYRVLRQLEDEQKRDIIEME |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-104 | 68 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 2e-84 | 58 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 2e-86 | 57 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 6e-87 | 57 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 4e-87 | 57 |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 5e-70 | 51 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 5e-70 | 51 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 1e-72 | 50 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 1e-72 | 50 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 1e-58 | 50 |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 6e-68 | 50 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 7e-57 | 50 |
