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Name : PC1_2213 (PC1_2213) Accession : YP_003017788.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : type III secretion protein, HrpO family Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 2543231 - 2543491 bp Length : 261 bp Strand : + Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: eca:ECA2078 type III secretion protein DNA sequence : ATGGAAATAATCACACTTTTCCGTCAGGCCATGGTGATGGTCGTGCTGCTCTCGGCGCCGCCGCTGCTGGTTGCGGTGAT CGTCGGCGTGCTGATCTCGCTGCTACAGGCGGTGATGCAGTTACAGGATCAAACGCTGCCCTTCGCCGTCAAGCTGATTT CCGTCGGGTTGGCGTTGGCGCTCTGCGGACGCTGGATTGGCGTAGAGCTGATGCAGTTGGCTATTACCGCGTTCAACATG ATTGCGCAGACCGGGGTATAA Protein sequence : MEIITLFRQAMVMVVLLSAPPLLVAVIVGVLISLLQAVMQLQDQTLPFAVKLISVGLALALCGRWIGVELMQLAITAFNM IAQTGV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 5e-19 | 79 |
| hrcS | ABA47280.1 | HrcS | Virulence | S-PAI | Protein | 2e-18 | 77 |
| hrcS | AAT96263.1 | HrcS | Virulence | S-PAI | Protein | 8e-19 | 77 |
| hrcS | AAT96304.1 | HrcS | Virulence | S-PAI | Protein | 8e-19 | 77 |
| hrcS | AAT96344.1 | HrcS | Virulence | S-PAI | Protein | 8e-19 | 77 |
| hrcS | AAT96147.1 | HrcS | Virulence | T-PAI | Protein | 2e-15 | 64 |
| hrcS | AAT96201.1 | HrcS | Virulence | T-PAI | Protein | 2e-15 | 64 |
| hrcS | ABQ88360.1 | HrcS | Virulence | Hrp PAI | Protein | 1e-13 | 64 |
| hrpO | AAB05076.1 | HrpO | Virulence | Hrp PAI | Protein | 1e-13 | 64 |
| hrcS | AAG33885.1 | HrcS | Virulence | Hrp PAI | Protein | 2e-15 | 63 |
| hrcS | NP_791221.1 | type III secretion protein HrcS | Virulence | Hrp PAI | Protein | 3e-15 | 63 |
