Gene Information

Name : PC1_2212 (PC1_2212)
Accession : YP_003017787.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : Yop virulence translocation R
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2542570 - 2543223 bp
Length : 654 bp
Strand : +
Note : TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; KEGG: eca:ECA2079 type III secretion system protein

DNA sequence : 
ATGACCTCCGGCGCGTTCGATCCGTTGATGTTTGCGCTCTTTCTGGGCGCACTCTCCCTGATTCCGCTGATGATGATTGT
CTGCACCTGCTTTCTGAAGATTGCCATTGTGCTGCTGATCACCCGCAACGCCATCGGGGTACAGCAGGTACCGCCCAATA
TGGCGCTGTACGGCATCGCGCTCGCGGCAACGCTGTTTGTGATGGCACCGGTCTTTCAGGACATCAGCAAGCGCGTGCAG
GAAAAGCCGCTGGATATGACCGATATCACGTCGCTTCAGGCCAGCGTGACCTACGGTCTGGAACCGCTGCAAACCTTTAT
GTCGCGCAACGTTGACCCGGATATTCTCACCCATCTGCATGAGAACAGCCTGCAAATGTGGCCCGCGTCGCTATCAGAAA
AGGTGAATACGCAAAATCTGCTGCTGGTGATCCCGGCTTTCGTGCTGTCGGAGCTACAGGCCGGGTTCAAAATCGGCTTC
CTGATTTATATCCCGTTTATCGTCATCGACCTCATCGTCTCCAACGTGCTGCTGGCGCTGGGGATGCAGATGGTCGCGCC
AATGACGCTGTCGCTGCCGTTAAAGCTGCTGCTGTTCGTGCTGGTGAACGGCTGGACGCGGCTGCTTGACGGCCTGTTTT
ACAGCTATCTGTGA

Protein sequence : 
MTSGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISKRVQ
EKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGF
LIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-74 78
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-67 74
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-67 74
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-61 72
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-61 72
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-61 72
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-66 72
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-66 71
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 5e-68 70
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-68 70
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 5e-63 70
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-36 49
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-35 47
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-31 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-31 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 9e-32 44
escR AAC31528.1 L0049 Virulence LEE Protein 2e-32 44
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-32 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-32 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-32 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-27 43
escR AAL57527.1 EscR Virulence LEE Protein 2e-32 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-32 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-32 43
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-32 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-32 43
escR AAC38369.1 EscR Virulence LEE Protein 1e-31 43
escR AAK26700.1 EscR Virulence LEE Protein 2e-32 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 7e-27 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-27 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-27 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-27 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-27 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 42
unnamed AAL06354.1 EscR Virulence LEE Protein 7e-31 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-31 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-31 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-31 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-29 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG0044 Protein 3e-37 48
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG0394 Protein 4e-36 47
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG0188 Protein 1e-36 46
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG0827 Protein 8e-33 44
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG2338 Protein 1e-22 43
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG0715 Protein 7e-32 43
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG2494 Protein 6e-23 43
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG1773 Protein 4e-32 42
PC1_2212 YP_003017787.1 Yop virulence translocation R VFG0519 Protein 1e-31 42