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Name : PC1_2206 (PC1_2206) Accession : YP_003017781.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : HrcV family type III secretion protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 2536039 - 2538141 bp Length : 2103 bp Strand : + Note : TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: eca:ECA2085 type III secretion protein DNA sequence : ATGAATCTGCTGATTACCTGGCTGAACCGTATTGCGCTGAGCGCGATGCAGCGCTCCGAGGTCGTTGGTGCGGTCATCGT GATGTCTATCGTTTTCATGATGATCATCCCGCTGCCTACCGAGTTGATCGATGTGCTCATCGCGCTCAACATCTGCGCCT CTTCTCTGCTGATCGTGCTGGCGATGTATCTGCCCAAGCCGCTGGCCTTCTCGACGTTTCCCGCGGTGCTGTTGTTGACC ACCATGTTCAGACTGGCGATCTCCATTTCCACCACACGCCAAATCCTGCTCCAGCAGGACGGTGGCCATATCGTTGAGGC TTTCGGTAACTACGTGGTAGGCGGGAATCTGGCGGTTGGTCTGGTTATCTTTCTGATTCTGACGGTGGTGAACTTTCTGG TGATCACCAAAGGCTCCGAGCGCGTAGCTGAGGTAGCGGCACGTTTCACACTGGATGCGATGCCCGGCAAACAGATGTCC ATCGACAGCGATCTGCGTGCCGGGCTGATCGAAGCCCATCAGGCGCGGCAGCGGCGCGAAAATCTGGCAAAAGAAAGTCA GTTATTCGGGGCGATGGACGGCGCGATGAAGTTCGTCAAAGGTGATGCCATTGCGTCGCTGGTTATCGTGTTCATCAATA TGATAGGCGGTTTCGCCATCGGCGTGTTGCAGCACAATATGGCCGCGTCCGATGCCATGCACGTCTACTCGGTTCTGACT ATCGGTGACGGACTGATCGCCCAAATCCCGGCGCTACTGATATCGCTGACGGCAGGGATGATCATCACCCGCGTCTCGGC CGATGGGCAAAAAGTGGATGCCAATATTGGTCGGGAAATCGCGGAACAGCTCACCAGCCAGCCCAAAGCGTGGATCATCT CCTCCATCGGCATGTTTGGCTTTGCGCTGCTGCCGGGGATGCCGACGCTGGTGTTTGTCGCTATCAGTCTGGCGTCGCTC GGCAGTGGTCTGTTTCAGCTTTGGCGCATCAAGCAGCAAGGTCAGTTGGATGCCAGCCAGTCGGAGGCGGACAACATGCC AGCCGAACAGAACGGCTATCAGGATCTGCGGCGTTTCAACCCCACCCGTGCCTATCTGCTGCTGTTTCATCCCATCTGGC AAGGACAGCCGACGGCAACGGCGCTGGTGCAGAATATCCGCCGCCTGCGTAACAAACTGGTCTATCGCTTCGGTTTTACG CTGCCGTCTTTTGATATCGAATTCAGCGATCGGCTGGCGGAGGATGAATTTCAGTTTTGCGTCTATGAAATTCCCTACGT GAAAGCCACCTTTGTCACCGATCGGTTGGCTGTTGCCAGTGCTGCCGTTGAACAGGTTGATACCGAGCTTGCCACGCCGG GTCCCACGCTGCGGGATGAAAGCCAATGGCTCTGGCTGCCGTTGGCTCATGTTTCGCAGCAGCCCGACGACGTACCGCGC TGGACAGCGGATGAGCTGATTCTGGCACGTATGGAGCAGGCTATTCATCGTACCGGTTCACAATTCATCGGCTTGCAGGA AACCAAATCCATTCTGGCCTGGCTGGAGAGCGAACAGCCGGAATTGGCGCAGGAGCTACAGCGCATCATGCCGCTCTCGC GTTTCGCCAGCGTGCTGCAACGACTGGCTTCCGAACGCGTGCCGCTTCGATCGGTGCGCCCCATCGCCGAGGCGCTGATT GAAGTCGGCCAGCATGAGCGGGATACGCTGGCGCTGACCGACTACGTGCGCCTGGCGCTCAAATCGCAAATCTGCCACCA GTACAGCGATGAAAACAGCCTTGCCGTCTGGCTACTGACGCCGGAAAGCGAAGAACTGCTGCGTGATGCGCTGCGCCAGA CGCAGAACGAAACCTTCTTCGCCCTGACACAGGACTACGCCTCCACGCTGCTCAGCCAGCTGCGGCAGGCGTTTCCGCCG CTCTCGTCGCAGCGCAGTCTGGTGCTGGTGGCGCAGGATTTACGCAGTCCGCTGCGTACGCTGTTACAAGACGAATTTCA CCACGTTCCGGTACTGTCCTTCACCGAGCTGGAATCCACCCTGTCGATCAACGTCATTGGGCGTCTCGATCTTTACGACT CCCCCGATCCCTTTAGCGCATAG Protein sequence : MNLLITWLNRIALSAMQRSEVVGAVIVMSIVFMMIIPLPTELIDVLIALNICASSLLIVLAMYLPKPLAFSTFPAVLLLT TMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMS IDSDLRAGLIEAHQARQRRENLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFGFALLPGMPTLVFVAISLASL GSGLFQLWRIKQQGQLDASQSEADNMPAEQNGYQDLRRFNPTRAYLLLFHPIWQGQPTATALVQNIRRLRNKLVYRFGFT LPSFDIEFSDRLAEDEFQFCVYEIPYVKATFVTDRLAVASAAVEQVDTELATPGPTLRDESQWLWLPLAHVSQQPDDVPR WTADELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQRLASERVPLRSVRPIAEALI EVGQHERDTLALTDYVRLALKSQICHQYSDENSLAVWLLTPESEELLRDALRQTQNETFFALTQDYASTLLSQLRQAFPP LSSQRSLVLVAQDLRSPLRTLLQDEFHHVPVLSFTELESTLSINVIGRLDLYDSPDPFSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 78 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 68 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 63 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 1e-102 | 42 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 5e-124 | 42 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 5e-103 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PC1_2206 | YP_003017781.1 | HrcV family type III secretion protein | VFG0064 | Protein | 7e-130 | 44 |
| PC1_2206 | YP_003017781.1 | HrcV family type III secretion protein | VFG0384 | Protein | 8e-122 | 41 |
| PC1_2206 | YP_003017781.1 | HrcV family type III secretion protein | VFG0198 | Protein | 9e-113 | 41 |
