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Name : PC1_2204 (PC1_2204) Accession : YP_003017779.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : ECF subfamily RNA polymerase sigma-24 subunit Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 2533961 - 2534506 bp Length : 546 bp Strand : - Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: eca:ECA2087 sigma factor DNA sequence : ATGGATATGTCTACCCTGAAACACATCGAACCGACCCCTTCGCTTTACCCGGCGCTCGCTGTCGATTGGGAACAGGTGTT TCGTCAACACGGAAAGAAATTGCATAACTTCATCCGCAAGCGCGTCAGCAACCATGACGACGTTGAGGATTTACAGCAAA TGACCTACCTGGAAGTGCTCAAACATCAGGATAAATTTGCGGGAGCATCGCGGCCGGAGACGTGGGTATTTGGTATTGCC CTCAATCTGGTTCGCAACTATTTCAAGCAGGCACGGCAGCGCGCTCAGGAAATGGGTGATGAGATGCTGGAGCATATTGC GATAGATCTCGATCCCGGCGCGATCGCTGAAAGCCAGCGGGCATTGAAACGCGCAATGGATGCCATCGTCTCACTGCCTG AGGATACCCGTCAGATGCTGATGCAGTTGCTGGATACCGATGCCAGTTATCAGGATCTTGCGTTGCAGTTGGAGATCCCC ATCGGTACGGTGCGGTCACGGCTGTCTCGTGCCCGAGGGGTGATCCGTCAGGCCGTTGAGTCCTGA Protein sequence : MDMSTLKHIEPTPSLYPALAVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKFAGASRPETWVFGIA LNLVRNYFKQARQRAQEMGDEMLEHIAIDLDPGAIAESQRALKRAMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLEIP IGTVRSRLSRARGVIRQAVES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpL | AAD24681.1 | sigma factor HrpL | Virulence | Hrp PAI | Protein | 3e-45 | 57 |
| hrpL | ABA47271.1 | HrpL | Virulence | S-PAI | Protein | 4e-32 | 50 |
| hrpL | AAT96335.1 | HrpL | Virulence | S-PAI | Protein | 4e-32 | 47 |
| hrpL | AAT96295.1 | HrpL | Virulence | S-PAI | Protein | 4e-32 | 47 |
| hrpL | AAT96254.1 | HrpL | Virulence | S-PAI | Protein | 3e-32 | 47 |
| hrpL | NP_791231.1 | RNA polymerase sigma factor HrpL | Virulence | Hrp PAI | Protein | 3e-25 | 45 |
| hrpL | AAT96137.1 | HrpL | Virulence | T-PAI | Protein | 2e-25 | 44 |
| hrpL | AAT96191.1 | HrpL | Virulence | T-PAI | Protein | 2e-25 | 44 |
| hrpL | AAG33875.2 | HrpL | Virulence | Hrp PAI | Protein | 2e-24 | 44 |
| hrpL | ABQ88350.1 | HrpL | Virulence | Hrp PAI | Protein | 5e-25 | 43 |
| hrpL | AAA17652.1 | putative alternate sigma factor | Virulence | Hrp PAI | Protein | 5e-25 | 43 |
