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Name : PC1_2197 (PC1_2197) Accession : YP_003017772.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Virulence Product : YscJ/HrcJ family type III secretion apparatus lipoprotein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4669 EC number : - Position : 2526698 - 2527465 bp Length : 768 bp Strand : - Note : TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: eca:ECA2095 type III secretion protein DNA sequence : ATGAAAATCGATAAGCGAGTGTTTCTTCTGCTGATCGGGCTATTGGCTGGCTGCGGCGAGCCGATTGAGCTGAATCGCGG GCTGTCGGAGAACGATGCCAACGAAGCGATTTCGATGCTTGGCCGTTATCAGATCGGCGCGGAGAAACGGGTGGACAAAA CCGGCGTTACGCTGGTGATCGACGCAAAAAACATGGAGCGTGCCGTCAATATTCTCAATGCGGCGGGCTTACCGAAGCAA TCACGTACTAATCTGGGCGAGGTCTTTCAGAAAAGTGGTGTGATTTCGACGCCGTTGGAAGAGCGCGCCCGCTATATCTA TGCCTTATCGCAGGAAGTGGAAGCAACGCTGGCGCAGATCGATGGCGTCCTGGTGGCGCGGGTGCATGTGGTGCTACCGG AGCGTATCGCCCCCGGCGAGCCGGTTCAGCCTGCCTCGGCAGCGGTGTTTATCAAATATCGTGCTGAACTGGAACCTGAT GGGATGGAGCCGCGCATCCGCCGTATGGTGGCCAGCAGTATCCCCGGCCTGTCCGGCAAGGATGATAAAGAACTGGCGAT CGTCTTTGTTCCGGCAGAGCCGTATCAGGACACGATCCCTGTTGTCACTCTGGGGCCGTTCACGCTCACGCCGGATGAAA TGCGACGCTGGCAGTGGAGTGCGGGGCTGTTCGGCCTGCTACTGGCTGGACTATTAGGCTGGCGCGTTGGCATGCCTTAC CTGCGCCAATGGCAGCAGAAAAAAGCGGGGGAGCCGTCGTCACAATGA Protein sequence : MKIDKRVFLLLIGLLAGCGEPIELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQ SRTNLGEVFQKSGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPD GMEPRIRRMVASSIPGLSGKDDKELAIVFVPAEPYQDTIPVVTLGPFTLTPDEMRRWQWSAGLFGLLLAGLLGWRVGMPY LRQWQQKKAGEPSSQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcJ | AAB49174.1 | HrcJ | Virulence | Hrp PAI | Protein | 5e-70 | 72 |
| hrcJ | ABA47308.1 | HrcJ | Virulence | S-PAI | Protein | 1e-61 | 65 |
| hrcJ | AAT96279.1 | HrcJ | Virulence | S-PAI | Protein | 1e-59 | 63 |
| hrcJ | AAT96320.1 | HrcJ | Virulence | S-PAI | Protein | 1e-59 | 63 |
| hrcJ | AAT96359.1 | HrcJ | Virulence | S-PAI | Protein | 6e-60 | 63 |
| hrcJ | AAB05080.1 | HrcJ | Virulence | Hrp PAI | Protein | 2e-59 | 61 |
| hrcJ | AAC35801.1 | putative hrp type III secretion pathway protein | Virulence | Hrp PAI | Protein | 1e-57 | 61 |
| hrpC | AAB00129.1 | HrpC | Virulence | Hrp PAI | Protein | 1e-55 | 61 |
| hrcJ | NP_791211.1 | type III secretion protein HrcJ | Virulence | Hrp PAI | Protein | 2e-55 | 61 |
| hrcJ | AAT96157.1 | HrcJ | Virulence | T-PAI | Protein | 3e-55 | 60 |
| hrcJ | AAT96211.1 | HrcJ | Virulence | T-PAI | Protein | 3e-55 | 60 |
