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Name : PC1_2188 (PC1_2188) Accession : YP_003017763.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : type VI secretion system Vgr family protein Function : - COG functional category : S : Function unknown COG ID : COG3501 EC number : - Position : 2518230 - 2520200 bp Length : 1971 bp Strand : - Note : TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA4142 putative rhs accessory genetic element DNA sequence : ATGGCAAACAGTACAGGATTACAGTTCACCGTTAAGGTCGGTGCCCTGGCGGCAGGCACTTTTGCAGTGGTGGATTTCAG GCTGGATGAAGGATTGAACCGGCCTTTCAGCCTGTCGCTAAGTCTGGCGAGCGCACAGCCGGATGTGGATTTCGGCGCGG TGCTGGACCAGCCGTGCGAGCTGATGATTTGGTATGAAGGCGAGCTGAAGCGCCGGGTCAGCGGGATTGTCAGTGGCTTC ACGCAGGGCGACACCGGTTTTCGGCGCACGCGCTATCAGATAGACGTCCGTCCGGCGCTGTGGCGACTGGGGCTGCGCAC CAATGCTCGTATTTTTCAGGCACAGACGCCGGATGCGATTATCAGCATGCTGCTGGAAGAGGCTGGAATCACTGACTACG CCTTTGCGCTGCGCAATGAGCACGCAGTGCGGGAATATTGCGTGCAGTACCGGGAAAGCGATTTGGCGTTTGTCACCCGT CTGGCCGCCGAGGAGGGCATGTATTTCTTCCACGAATACGAAGAGGGTAAACACCGGGTGGTGTTTGCCGACGACGCCGG GGCGCTGACCAAAGGCCCGGAGCTGTTCTTCAATCTGGCGACACAAGGGCTGAGCGAGGGGGAATACATTCGGCGCTTCC ACTACGCAGAGCGGGTGAGCACTGCCGAAGTCGAGTTGAAAGACTACAGCTTCAAAACGCCGGCTTACGGGCTGTCACAC AAGAAGATGAGCGGTGAACTTGAGCACCAGCGTGAAAGCTACCAGCATTACGATTATCCGGGGCGCTATAAGCAAGACCC GAGCGGCAAGGCGTTCAGCGGCTACCGGCTGGATGCGCTGCGGTCAGGGGCGGTGACGGGCGAAGGGGAATCCAACTGTG CGGGGCTGATGCCGGGCAGTACGTTTACCCTGACGGAGCATCCGAATACGACGCTGAATGCGGTCTGGCAGACGGTGAGC GTGACGCACGTCGGGCAACAGCCGCAGGCGCTGGAAGAGGAAAGCGGTGGTGAACCGACCACGATGAGTAACAGTTTTGC GGTGGTGAAAGGGACAACAACGTGGCGCACCGCGATGCCGTATAAACCGATGGTGGACGGCCCGCAAATCGCCACTGTTG TCGGTCCGGCTGGGGAAGAAATCTACTGTGACCCGTATGGTCGGGTGAAACTGCAATTCCCGTGGGACAGATACGGCGCC AGTAACGACCAGAGCTCCTGCTGGGTGCGCGTCAGTCAGGGCTGGGCGGGCGGTCAGTACGGCATGATTGCTATCCCCCG TATCGGCCATGAAGTGATCGTCAGCTTCCTGGAGGGCGATCCGGATCAGCCGATTGTCACCGGGCGGACGTTCCACGTCA CTAATCCGTCTCCCTATCCGCTGCCTGCCAACAAAACACGGACCACGCTTCGTTCCAAAACCCATAAAGGCAAAGGCTTT AACGAACTCAGCTTCGAGGATGCGACCGACAACGAAGAGATCTTCCTTCATGCCCAGAAGAATATGGCTGTGCGGGTACT GAATTCCAAAGATGAGCGCGTGGACTATAACCGCACGACGAGCATCGGACATGATGAAGAACTGGTGGTCGCCAACAATC GTAAAATCACGGTGGAAGGCAATCAGGATCACAAAACCACCGGCAACCATTTATCGCTGACCGAAGGCGATAGCGGCATA CAGGTTAAGGGCGATCTGACGCAGAAAATCAACGGAGTATTCAGCGTAGACAGCAACGGCGATCTGACGCTGCAAAGCGG CAGCAAACTGACGCTCCGCGTCGGAAGCAGCTTTGTGGTAATCCACGCTGGTGGAGTGGACATCAAAGGGCCAGCCATCA ACCTGAATTCAGGCGGCAGTCCGGGCGATGTTGCCCTCCCTGCTGACCCGGCGATATTGAAAGCAGCGGCGGCCGCAGGG ACGATGTTTGTGGCGCACTGTCCGGCAAAGGAGAAAGAAAACAGTGAGTGA Protein sequence : MANSTGLQFTVKVGALAAGTFAVVDFRLDEGLNRPFSLSLSLASAQPDVDFGAVLDQPCELMIWYEGELKRRVSGIVSGF TQGDTGFRRTRYQIDVRPALWRLGLRTNARIFQAQTPDAIISMLLEEAGITDYAFALRNEHAVREYCVQYRESDLAFVTR LAAEEGMYFFHEYEEGKHRVVFADDAGALTKGPELFFNLATQGLSEGEYIRRFHYAERVSTAEVELKDYSFKTPAYGLSH KKMSGELEHQRESYQHYDYPGRYKQDPSGKAFSGYRLDALRSGAVTGEGESNCAGLMPGSTFTLTEHPNTTLNAVWQTVS VTHVGQQPQALEEESGGEPTTMSNSFAVVKGTTTWRTAMPYKPMVDGPQIATVVGPAGEEIYCDPYGRVKLQFPWDRYGA SNDQSSCWVRVSQGWAGGQYGMIAIPRIGHEVIVSFLEGDPDQPIVTGRTFHVTNPSPYPLPANKTRTTLRSKTHKGKGF NELSFEDATDNEEIFLHAQKNMAVRVLNSKDERVDYNRTTSIGHDEELVVANNRKITVEGNQDHKTTGNHLSLTEGDSGI QVKGDLTQKINGVFSVDSNGDLTLQSGSKLTLRVGSSFVVIHAGGVDIKGPAINLNSGGSPGDVALPADPAILKAAAAAG TMFVAHCPAKEKENSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| vgrG | AAN64196.1 | VgrG | Not tested | macrophage toxin pathogenicity island | Protein | 4e-152 | 50 |
| aec15 | YP_851429.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 1e-125 | 43 |
| aec15 | AAQ96709.1 | Aec15 | Not tested | AGI-1 | Protein | 8e-126 | 43 |
