Gene Information

Name : PC1_1919 (PC1_1919)
Accession : YP_003017496.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2211328 - 2212242 bp
Length : 915 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: eca:ECA2392 periplasmic chelated iron-binding protein

DNA sequence : 
ATGATTGGTTTTCACGCCCGTTTCCCCGCCCTGTTTCGTCACATCGCACTGCCGTGCGTGTTACTGCTTTTAGCCGGTAC
CTCCGCTCAAGCGGCTGAAAAGCTTAAAGTCATCACCACCTTTACCATCATTCAGGATATCGCACAGAATATTGCAGGCG
ATGCCGCGACCGTCGAATCCATCACCAAACCCGGTGCCGAGATTCATGATTATCAACCGACACCGCGCGATATTGTGAAA
ACACAGTCTGCGCAGTTGGTACTGTGGAACGGAATGAATCTTGAGCGCTGGTTTACGCGCTTTTTTGAAAACGTGAAAAA
TGTGCCCGCCGTTGTAGTAACGGAAGGCATCACGCCGCTTCCGATTCGTGAAGGCGCTTATAATGGCAACCCAAACCCGC
ATGCCTGGATGTCTCCCTCCAATGCATTAATCTATATTGAAAATATCCGCAAAGGCCTGGTGCAAGCCGATCCTGCTAAT
GCAGAGACATATAATCGTAATGCCAAAGCCTATGCAGAAAAAATTAAGGCTCTCGACGCACCTCTGCGTGAGCGTCTTTC
CCGCATTCCAGAACAACAACGTTGGTTAGTCACCAGTGAAGGCGCCTTCAGCTATCTGACGAAGGATTATCAGTTCAATG
AGGTCTACCTCTGGCCAATCAATGCCGACGAGCAAGGCTCTCCGCAGCAAGTGCGTCGGGTTATCGATACCGTGCGCGAA
AAATCTATTCCTGTGGTATTCAGCGAAAGTACCGTTTCCGATAAACCAGCCAAACAGGTCAGCAAGGAAACGGGGGCTAA
ATATGGCGGCGTACTATATGTTGATTCGTTGTCTACAGAAAAAGGCCCTGTGCCAACCTATATCGACCTGTTACAAGTGA
CGGTGGAAACCATCGCGAAAGGATTTAATCAATGA

Protein sequence : 
MIGFHARFPALFRHIALPCVLLLLAGTSAQAAEKLKVITTFTIIQDIAQNIAGDAATVESITKPGAEIHDYQPTPRDIVK
TQSAQLVLWNGMNLERWFTRFFENVKNVPAVVVTEGITPLPIREGAYNGNPNPHAWMSPSNALIYIENIRKGLVQADPAN
AETYNRNAKAYAEKIKALDAPLRERLSRIPEQQRWLVTSEGAFSYLTKDYQFNEVYLWPINADEQGSPQQVRRVIDTVRE
KSIPVVFSESTVSDKPAKQVSKETGAKYGGVLYVDSLSTEKGPVPTYIDLLQVTVETIAKGFNQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-92 63
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-92 62
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-92 62
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-92 62
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-92 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1919 YP_003017496.1 periplasmic solute binding protein BAC0439 Protein 7e-114 78
PC1_1919 YP_003017496.1 periplasmic solute binding protein BAC0349 Protein 2e-92 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1919 YP_003017496.1 periplasmic solute binding protein VFG0525 Protein 2e-92 62