Gene Information

Name : PC1_1917 (PC1_1917)
Accession : YP_003017494.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2209578 - 2210441 bp
Length : 864 bp
Strand : -
Note : PFAM: ABC-3 protein; transport system permease protein; KEGG: eca:ECA2394 chelated iron transport system membrane protein

DNA sequence : 
ATGATCGATATCCTGTTACAGCCATTCAGCTATAACTACATGGTCAAAGCGATCTGGGTCAGCGCGATTGTCGGCGGCGT
ATGCGCTTTTCTTTCGGCGTACCTGATGCTGAAAGGCTGGTCGCTGATGGGCGATGCGCTCTCCCACTCTGTCGTTCCCG
GTGTTGCAGGTGCCTATGCATTGGGCCTGCCCTACGCGGCGGGGGCATTTTTTACCGGCATGCTCGCCGCGATGGCGATG
ACCCTCATCCGTCACATTACCCGATTGCGCGAAGATGCGATTATCGGCTTTATTTTCTCAACGTTTTTCGCTGTCGGTCT
GCTGATCATTTCGCTTAATCCGACATCGGTTAACGTGCAATCCATCATTTTCGGCAATATTTTGGGCATTGCCGACGAAG
ATATTCTGCAAGTTGAAATCATCATTGGTGTAACGTTCCTGATTCTCTGCCTGCTGTGGAAAGATCTGCTAGCCGTGTTC
TTCGATGAAAACCACGCCCGTTCGATTGGCCTTTCTCCACTGAAGCTGAAAATTCTGTTCTTTACGCTGTTGAGCGCCTG
TACTGTCGCGGCGTTGCAAACCGTCGGGGCGATTTTGGTAATCGCAATGGTGATTACACCGGGTGCCACCGCTTACCTGC
TCACCGATCGGTTTGGTCGTCTGGTTGTGATTTCTATTGCACTGGGCGCCATTACCAGCGCCGTGGGCGCGTATCTGAGC
TTTTTCCTTGATGGCGCAACTGGCGGCGTGATTGTCACCTTGCAAACCGTCGTCTTCCTGTTGGCGTTTGTCTTTGCCCC
CAAGCACGGGTTGCTGGCATCGCGCCGCCTGCGGCTACGCGATCAATCAGGAGATGCATTATGA

Protein sequence : 
MIDILLQPFSYNYMVKAIWVSAIVGGVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFTGMLAAMAM
TLIRHITRLREDAIIGFIFSTFFAVGLLIISLNPTSVNVQSIIFGNILGIADEDILQVEIIIGVTFLILCLLWKDLLAVF
FDENHARSIGLSPLKLKILFFTLLSACTVAALQTVGAILVIAMVITPGATAYLLTDRFGRLVVISIALGAITSAVGAYLS
FFLDGATGGVIVTLQTVVFLLAFVFAPKHGLLASRRLRLRDQSGDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-75 66
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-75 66
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-75 66
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-75 66
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-75 66
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-42 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-42 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-41 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-41 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1917 YP_003017494.1 ABC-3 protein BAC0441 Protein 1e-100 89
PC1_1917 YP_003017494.1 ABC-3 protein BAC0351 Protein 1e-75 66
PC1_1917 YP_003017494.1 ABC-3 protein BAC0352 Protein 3e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1917 YP_003017494.1 ABC-3 protein VFG0527 Protein 1e-75 66
PC1_1917 YP_003017494.1 ABC-3 protein VFG0528 Protein 3e-42 43