Gene Information

Name : PC1_1916 (PC1_1916)
Accession : YP_003017493.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2208724 - 2209581 bp
Length : 858 bp
Strand : -
Note : PFAM: ABC-3 protein; transport system permease protein; KEGG: eca:ECA2395 chelated iron transport system membrane protein

DNA sequence : 
ATGACACTGATGAGCTGGCTAATTGACCCACTGACCTATCCCTTCATGCAACGTGCGTTACTTGCCGCCGTCGTCACAGG
TACGGTCTGCGCGGTACTGTCGTGCTATCTGGTGCTGAAAGGCTGGTCGCTAATGGGTGATGCCATTTCCCATGCCGTGC
TGCCCGGTATCGTTGTCGCGTTTTTACTGGGGATCCCGCTGGTCATCGGCGCGTTCGTTTCCGGTATTTTTTGTGCAGTA
GCGACAGGATACGTGAAAGAACACAGCCGCGTAAAAGAAGATACGGTAATGGGGATCATCTTTTCCGGTATGTTTGCGCT
GGGACTCGTCATGTTCGCGCGTATCGATACCGATCAGCATCTAAACCATATCTTGTTTGGTAACGTGCTGGGCATCACTC
AGCAAGAGCTGACGCAAATCTTGCTGATTGCCGGGGTAACACTGGGTATTGTGTTGCTGAAACGGCGAGATTTCATGCTG
TACTGCTTCGATCCCAACCATGCGCGCGTCATCGGCCTGCCCGTTAAGCTGCTACACTATGGATTGCTAAGCCTGCTGGC
GATGACGATTGTCGCATCACTACAGGCTGTCGGCGTTATTCTGGTGATTGCGATGCTGATTGCGCCGGGCATTATTGCCT
TTATGGTCTGCAAGCGCTTCGAGCGTATGGTGCTTGTCGCCACGCTGGTTTCCGTCATTTCCTGTATCGCTGGTACGCTG
ATCAGTTTCTATATTGATGGCGCGACAGGCCCTTGCATCGTTATCGTTCAGGCCCTGTTCTTCACGCTGGCGCTGACATA
CCACCAGCTAAAACTGCGTCGTCAGTCGGCATCTCAGGTTGTCACCGACGCGCTATAG

Protein sequence : 
MTLMSWLIDPLTYPFMQRALLAAVVTGTVCAVLSCYLVLKGWSLMGDAISHAVLPGIVVAFLLGIPLVIGAFVSGIFCAV
ATGYVKEHSRVKEDTVMGIIFSGMFALGLVMFARIDTDQHLNHILFGNVLGITQQELTQILLIAGVTLGIVLLKRRDFML
YCFDPNHARVIGLPVKLLHYGLLSLLAMTIVASLQAVGVILVIAMLIAPGIIAFMVCKRFERMVLVATLVSVISCIAGTL
ISFYIDGATGPCIVIVQALFFTLALTYHQLKLRRQSASQVVTDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-68 50
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-67 50
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-67 50
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-67 50
sitD NP_461785.1 permease Virulence SPI-1 Protein 8e-68 50
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-53 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-53 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1916 YP_003017493.1 ABC-3 protein BAC0442 Protein 6e-104 78
PC1_1916 YP_003017493.1 ABC-3 protein BAC0352 Protein 3e-68 50
PC1_1916 YP_003017493.1 ABC-3 protein BAC0441 Protein 2e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1916 YP_003017493.1 ABC-3 protein VFG0528 Protein 3e-68 50