Gene Information

Name : PC1_0177 (PC1_0177)
Accession : YP_003015774.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Resistance
Product : O-succinylhomoserine (thiol)-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : 2.5.1.48
Position : 204274 - 205434 bp
Length : 1161 bp
Strand : +
Note : KEGG: eca:ECA4252 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein

DNA sequence : 
ATGACGCGTAAACAGGCAACGATCGCAGTCCGCAGTGGGTTAAATGATGATGAACAGTATGGCTGCGTCGTCCCCCCCAT
TCACCTTTCCAGCACGTATAATTTTACCGGATTCAACCAGCCACGCGCACACGACTATTCACGTCGCGGTAACCCTACGC
GGGATGTGGTACAGCGTGCGCTTGCTGAACTGGAAGGCGGCGCAGGTGCGGTAATGACGAGCAGCGGAATGTCGGCGATT
ATGCTGGTTTGTACGGTGTTCCTGCGTCCCGGCGATTTGCTGGTGGCGCCGCATGATTGCTACGGCGGCAGCTATCGTCT
GTTTGACAGTCTGAACAAGCGCGGCGCGTTTCGCGTCAAATTTGTCGATCAAAGTGATACCGCTGCACTCAACGCGGCGC
TGGCAGAAAAGCCGAAGCTGGTGCTGGTGGAAAGCCCGAGCAATCCACTGCTGCGTGTCGTGGATATTGCCGCGATTTGT
CAGGCTGCGCGTGAAGCGGGCGCGGTTAGCGTGGTAGATAACACTTTCCTGAGCCCGGCGTTGCAGAAGCCGCTGGAGCT
GGGTGCCGATCTGGTGGTGCATTCGTGCACCAAGTACCTGAATGGCCACTCTGATGTGGTGGCGGGTGCGGTAATCGCCA
AAGATGCCGATACCATTACTGAATTGGCCTGGTGGGCGAACAATATCGGTGTCACAGGCGCGGCGTTTGACAGCTATCTG
TTGCTGCGCGGCCTGCGTACTCTGGCGCCGCGTATGGCGGCGGCGCAGCGTAACGCGCAACAAATCGTTGAATTCTTACA
GACGCAGCCGCTGGTGAAGGCGTTGTATCATCCTTCACTGCCAAATAATCCCGGTCATGATATTGCCCGCCGTCAACAAT
CTGGCTTTGGCGCTATGCTAAGTTTTGAGCTGGATGGTGATGAAGATACCCTGCGGCGTTTTCTTGCCTCGCTGGAATTG
TTCACGCTGGCGGAATCGCTGGGCGGGGTTGAAAGTCTCATTTCTCATGCGGCAACGATGACGCATGCCGGTATGGCGCC
AGAAGCGCGTGCCGCGGCGGGTATCTCTGAAACATTACTGCGTATTTCCACCGGCATTGAAGACGGCGATGATCTGGTTG
CCGATCTGGATCGTGCGTTTCAAGCCGCAGCCAAGAGGTAA

Protein sequence : 
MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNQPRAHDYSRRGNPTRDVVQRALAELEGGAGAVMTSSGMSAI
MLVCTVFLRPGDLLVAPHDCYGGSYRLFDSLNKRGAFRVKFVDQSDTAALNAALAEKPKLVLVESPSNPLLRVVDIAAIC
QAAREAGAVSVVDNTFLSPALQKPLELGADLVVHSCTKYLNGHSDVVAGAVIAKDADTITELAWWANNIGVTGAAFDSYL
LLRGLRTLAPRMAAAQRNAQQIVEFLQTQPLVKALYHPSLPNNPGHDIARRQQSGFGAMLSFELDGDEDTLRRFLASLEL
FTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGDDLVADLDRAFQAAAKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 3e-58 42
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 9e-60 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_0177 YP_003015774.1 O-succinylhomoserine (thiol)-lyase BAC0207 Protein 8e-50 42