Gene Information

Name : PC1_1631 (PC1_1631)
Accession : YP_003017208.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1878205 - 1879434 bp
Length : 1230 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: eca:ECA2750 prophage integrase

DNA sequence : 
ATGGCACGTCAGACAAAGCCCCTGAACAATACTGAGGTCAAAAGCGCCAAGGCAACTGACCGTGCCATCACCCTCTACGA
TGGAGATGGTTTAGAATTACAGGTCACTCCGAGCGGTTCAAAACTCTGGCGTTTTCGCTACTACAAACCCTTCACTCGCA
AACGTGCAATGATTAGCCTTGGCGCTTACCCTTCGGTATCTCTTGCCGAAGCACGTAAGCTTCGTGAAGATGCACGACTT
CTTCTTAGCAAAGACGTTGATCCGCAGGAGCATAAGCAAGCAGAGCAATCACGGCAAAAAAATGCTACAGAAAACACATT
TGAAAAAGTGGCTGCCGAATGGTTTAAAACTAAAGAATCAGCAGGTTTGGCAACACATACGTTGAACGATATCTGGCGAT
CCATGAGCAAGTATGTGTTCCCACACATTGGCTCTATGCCTATTGCTAACATCACGGCTCAACGATTTATTGGAGCGTTA
GAACCCACTCATGCCTCTGGCAGGCTTGAAACTGTAAAAAGGCTGAGTCAGCGTATTAATGAAGTCATGGATTATGCCCT
CAACTCTGGTCTGGTATCTGTAAATCCAGCCGCACGAATTGGACGAACATTCCATAAGCCGAAGGTGAAGCATCGCCCTG
CCCTCTTGCCAGAGCAATTACCACTTCTGATGAAAACACTGTCATTTGCCAGCATTGGGCGACAAACCCGTTGCCTTATC
GAATGGCAATTACTCACCATGACTCGGCCAGCCGAAGCTGCCGAATCACGCTGGGATGAAATCGATTTTGACGCAAAAGA
ATGGCGTATTCCTGCTGGCCGTATGAAGATGAAGCGTGAGCACGTTATCCCACTCTCAGAGCAAGCGCTGGGGATTCTGG
AAGTCATGAAGCCCATCAGTAAGCACAGAGATTATGTCTTCCCCGGATATCGTAATCCACTTGAGCCGATGAACAGCCAG
ACAGCGAACATGGCACTCAAACGTATGGGCTTCAAAGATATGCTCGTAGCTCATGGTATGAGAGCCATTGCTTCGACCAT
CCTCAATGAAAAAGGATTTCCCCCTGATGTGATCGAAGCAGCGTTAGCGCATATCGATACTAATGAAGTCAGGAGAGCCT
ATAACAGGGCGCAGTATCTTGAACAGCGCAGAGAAATGATGGCTTGGTGGGGAGAGCATGTTGAGTCAGCTTCATATGGT
AAAACGAGCATCATTTCTGTCGCTGGCTAA

Protein sequence : 
MARQTKPLNNTEVKSAKATDRAITLYDGDGLELQVTPSGSKLWRFRYYKPFTRKRAMISLGAYPSVSLAEARKLREDARL
LLSKDVDPQEHKQAEQSRQKNATENTFEKVAAEWFKTKESAGLATHTLNDIWRSMSKYVFPHIGSMPIANITAQRFIGAL
EPTHASGRLETVKRLSQRINEVMDYALNSGLVSVNPAARIGRTFHKPKVKHRPALLPEQLPLLMKTLSFASIGRQTRCLI
EWQLLTMTRPAEAAESRWDEIDFDAKEWRIPAGRMKMKREHVIPLSEQALGILEVMKPISKHRDYVFPGYRNPLEPMNSQ
TANMALKRMGFKDMLVAHGMRAIASTILNEKGFPPDVIEAALAHIDTNEVRRAYNRAQYLEQRREMMAWWGEHVESASYG
KTSIISVAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 9e-107 53
unnamed AAA82714.1 integrase Not tested VPI Protein 3e-110 53
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 5e-110 53
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 5e-110 53
int AAK20773.1 integrase Not tested VPI Protein 3e-110 53
int AAK20803.1 integrase Not tested VPI Protein 3e-110 53
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 7e-93 49
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 7e-93 49
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 3e-93 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1631 YP_003017208.1 integrase family protein VFG1092 Protein 3e-93 49