|
Name : PC1_1626 (PC1_1626) Accession : YP_003017203.1 Strain : Pectobacterium carotovorum PC1 Genome accession: NC_012917 Putative virulence/resistance : Unknown Product : Hcp1 family type VI secretion system effector Function : - COG functional category : S : Function unknown COG ID : COG3157 EC number : - Position : 1874406 - 1874891 bp Length : 486 bp Strand : + Note : TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA3672 hypothetical protein DNA sequence : ATGGCTAATTATGCATACATGACTATCGAAGGTAAATCACAGGGATTGATTTCTGAGGGTTGCTCCACATTAGAATCTAT TGGTAACCGATATCAGGCAGGACATACCGATGAAATCATGATCTTGGCTTTCAACCATATGATGAGCAATGATGGTCATG CAGTCCATAATCCGATCACCCTGGTAAAACCTATCGATAAGTCAACGCCGTTACTGGCAATGGCATTGAACGAGCAAGAG AAGGTCAAAGTGTTGATCGACTTTTACCGCACGACGCAACATGCCAAGCAAGAGAAGTTTTTCTCCATTCAGATCAATGA TGGACTCATATCTGATATCAACCTCGTTATGCCCAACATCATTGATGATGGTGCTGGCCTGATATTAGAGCATATCTCTA TCAGGTATAAAGATGTGACATGGACGCACCACAAAGCCGGGACGTCTGGTTATGCACTGTGGGAAATGACGAAGTTCATG AACTAA Protein sequence : MANYAYMTIEGKSQGLISEGCSTLESIGNRYQAGHTDEIMILAFNHMMSNDGHAVHNPITLVKPIDKSTPLLAMALNEQE KVKVLIDFYRTTQHAKQEKFFSIQINDGLISDINLVMPNIIDDGAGLILEHISIRYKDVTWTHHKAGTSGYALWEMTKFM N |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf23 | AAO17189.1 | Orf23 | Not tested | tcd island | Protein | 2e-32 | 44 |
| HH0243 | NP_859774.1 | hypothetical protein | Not tested | HHGI1 | Protein | 4e-23 | 41 |
